Flavobacteriaceae
| Flavobacteriaceae | |
|---|---|
| |
| Elizabethkingia meningoseptica on a blood agar plate | |
Scientific classification 
| |
| Domain: | Bacteria |
| Phylum: | "Bacteroidetes" |
| Class: | Flavobacteriia |
| Order: | Flavobacteriales |
| Family: | Flavobacteriaceae Reichenbach 1992[1] |
| Genera | |
|
See text. | |
The family Flavobacteriaceae is composed of environmental bacteria.[1][2] Most species are aerobic, while some are microaerobic to anaerobic; for example Capnocytophaga and Coenonia.[3]
Genera[]
The family Flavobacteriaceae comprises the following genera:[4]
- Actibacter Kim et al. 2008
- Aequorivita Bowman and Nichols 2002
- Aestuariibaculum Jeong et al. 2013
- Park et al. 2018
- Park et al. 2015
- Algibacter Nedashkovskaya et al. 2004
- Yoon et al. 2015
- "Algorimicrobium" García-López et al. 2019
- "Altibacter" Chen et al. 2014
- "Altuibacter" Chen et al. 2013
- Chen et al. 2020
- "Candidatus Amoebinatus" Greub et al. 2004
- Li et al. 2018
- Yang et al. 2014
- Xamxidin et al. 2016
- Aquibacter Hameed et al. 2014
- Aquimarina Nedashkovskaya et al. 2005
- Liu et al. 2016
- Arenibacter Ivanova et al. 2001
- Zhang et al. 2013
- "Ascidiaceibacter" Chen et al. 2018
- Yoon et al. 2016
- Teramoto et al. 2016
- García-López et al. 2020
- Song et al. 2015
- Zhao et al. 2021
- Park et al. 2013
- Yoon et al. 2015
- Park et al. 2012
- Haber et al. 2013
- "Avrilella" Leyer et al. 2020
- Bizionia Nedashkovskaya et al. 2005
- Capnocytophaga Leadbetter et al. 1982
- Cellulophaga Johansen et al. 1999
- Wang et al. 2017
- "Citreibacter" Yoon et al. 2018
- Yoon et al. 2014
- "Cochleicola" Shin et al. 2016
- Coenonia Vandamme et al. 1999
- Confluentibacter Park et al. 2016
- "Coraliitalea" Yoon et al. 2018
- Kim et al. 2012
- Costertonia Kwon et al. 2006
- Croceibacter Cho and Giovannoni 2003
- Croceitalea Lee et al. 2008
- Croceivirga Hu et al. 2017
- Siddiqi et al. 2017
- Dokdonia Yoon et al. 2005
- "Candidatus Endobryopsis" Zan et al. 2019[5]
- Alain et al. 2008
- Lucena et al. 2010
- Chen et al. 2020
- "Feifantangia" Zheng et al. 2015
- Teramoto and Nishijima 2015
- Yin et al. 2021
- Nedashkovskaya et al. 2015
- Flaviramulus Einen and Øvreås 2006
- Yi et al. 2012
- Flavobacterium Bergey et al. 1923 (Approved Lists 1980)
- Formosa Ivanova et al. 2004
- Yoon et al. 2015
- "Fucobacter" Sakai et al. 2002
- Khan et al. 2008
- Gaetbulibacter Jung et al. 2005
- Galbibacter Khan et al. 2007
- Lee et al. 2011
- Tang et al. 2016
- Gelidibacter Bowman et al. 1997
- Park et al. 2013
- Gillisia Van Trappen et al. 2004
- Gilvibacter Khan et al. 2007
- Gramella Nedashkovskaya et al. 2005
- Feng et al. 2020
- Hameed et al. 2015
- "Candidatus Hemobacterium" Zhang and Rikihisa 2004
- Kwon et al. 2014
- Jung et al. 2013
- Yoon et al. 2010
- Shakeela et al. 2015
- Surendra et al. 2012
- Park et al. 2013
- Lee et al. 2009
- Joostella Quan et al. 2008
- Kordia Sohn et al. 2004
- Nedashkovskaya et al. 2008
- Bowman and Nichols 2005
- Leeuwenhoekiella Nedashkovskaya et al. 2005
- Mitra et al. 2009
- Jin and Jeon 2015
- Arun et al. 2009
- Lutibacter Choi and Cho 2006
- Lutimonas Yang et al. 2007
- Mangrovimonas Li et al. 2013
- Maribacter Nedashkovskaya et al. 2004
- Mariniflexile Nedashkovskaya et al. 2006
- Wu et al. 2016
- "Marinitalea" Kim et al. 2011
- Park et al. 2013
- Park et al. 2009
- Marixanthomonas Romanenko et al. 2007
- Wang et al. 2010
- Asker et al. 2008
- Feng et al. 2020
- Mesonia Nedashkovskaya et al. 2003
- Muricauda Bruns et al. 2001
- Kahng et al. 2010
- Myroides Vancanneyt et al. 1996
- Jung et al. 2012
- Yoon and Kasai 2015
- Lau et al. 2005
- Oceanihabitans Zhang et al. 2016
- "Ochrovirga" Kwon et al. 2014
- Mancuso Nichols et al. 2005
- Wang et al. 2020
- Huang et al. 2021
- Kawano et al. 2020
- Wu et al. 2020
- Wang et al. 2020
- Pibocella Nedashkovskaya et al. 2005
- Zhong et al. 2016
- Polaribacter Gosink et al. 1998
- Janthra et al. 2020
- Wang et al. 2020
- Lee et al. 2012
- Yu et al. 2012
- "Candidatus Prosiliicoccus" Francis et al. 2019
- Park et al. 2018
- Yoon et al. 2013
- Huang et al. 2016
- Nedashkovskaya et al. 2009
- Psychroflexus Bowman et al. 1999
- Psychroserpens Bowman et al. 1997
- "Pukyongia" Kim et al. 2020
- Wang et al. 2013
- Hameed et al. 2014
- Robiginitalea Cho and Giovannoni 2004
- Sabulilitoribacter Park et al. 2014
- Salegentibacter McCammon and Bowman 2000
- Salinimicrobium Lim et al. 2008
- Fagervold et al. 2017
- Sediminibacter Khan et al. 2007
- Sediminicola Khan et al. 2006
- Park et al. 2014
- Hameed et al. 2013
- Xu et al. 2013
- Yi and Chun 2011
- "Spodiobacter" Tomida et al. 2019
- Yoon et al. 2016
- Yoon et al. 2016
- Yoon et al. 2015
- "Spongitalea" Mitra et al. 2012
- Subsaxibacter Bowman and Nichols 2005
- Subsaximicrobium Bowman and Nichols 2005
- "Sufflavibacter" Kwon et al. 2007
- Yoon et al. 2013
- Jung et al. 2016
- Tamlana Lee 2007
- Tenacibaculum Suzuki et al. 2001
- Ulvibacter Nedashkovskaya et al. 2004
- Zhang et al. 2021
- Shin and Yi 2020
- "Vaginella" Diop et al. 2017
- Liu et al. 2014
- Winogradskyella Nedashkovskaya et al. 2005
- He et al. 2020
- Vaidya et al. 2015
- Yeosuana Kwon et al. 2006
- Zeaxanthinibacter Asker et al. 2007
- Zhouia Liu et al. 2006
- Zobellia Barbeyron et al. 2001
- Zunongwangia corrig. Qin et al. 2007
Phylogeny[]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature[4] and the phylogeny is based on whole-genome sequences.[6][a]
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Notes[]
- ^ Actibacter, Aestuariibaculum, Aestuariimonas, Aestuariivivens, Algitalea, Amniculibacterium, Antarcticibacterium, Antarcticimonas, Aquaticitalea, Aquibacter, Arcticiflavibacter, Ascidiimonas, Aurantiacicella, Aurantivirga, Aureibaculum, Aureisphaera, Aureivirga, Changchengzhania, Citreitalea, Coenonia, Corallibacter, Costertonia, Daejeonia, Euzebyella, Faecalibacter, Flavicella, Flavihalobacter, Flavimarina, Frondibacter, Fulvibacter, Gangjinia, Gelatiniphilus, Geojedonia, Gilvibacter, Haloflavibacter, Hoppeia, Hwangdonia, Jejudonia, Leptobacterium, Litoribaculum, Lutaonella, Lutimonas, Mariniflexile, Marinivirga, Maritimimonas, Marixanthomonas, Meridianimaribacter, Mesohalobacter, Namhaeicola, Neptunitalea, Paramesonia, Pareuzebyella, Patiriisocius, Paucihalobacter, Pelagihabitans, Pibocella, Planktosalinus, Pontimicrobium, Poritiphilus, Postechiella, Pseudobizionia, Pseudofulvibacter, Pseudotenacibaculum, Robertkochia, Sabulilitoribacter, Saonia, Sediminibacter, Sediminicola, Seonamhaeicola, Snuella, Spongiiferula, Spongiimicrobium, Spongiivirga, Subsaxibacter, Subsaximicrobium, Sungkyunkwania, Taeania, Ulvibacterium, Urechidicola, Wocania, and Yeosuana are not included in this phylogenetic tree.
References[]
- ^ a b Reichenbach H. (1989). "Order 1. Cytophagales Leadbetter 1974, 99*=". In Staley JT, Bryant MP, Pfennig N, Holt JG (eds.). Bergey's manual of systematic bacteriology. 3. Baltimore: The Williams & Wilkins Co. pp. 2011–2013.
- ^ Boone DR, Castenholz RW, eds. (2001). Bergey's Manual of Systematic Bacteriology. 1 (The Archaea and the deeply branching and phototrophic Bacteria) (2nd ed.). New York, NY: Springer-Verlag. pp. 465–466.
- ^ "An Introduction to the Family Flavobacteriaceae". The Prokaryotes. New York: Springer. 2006. pp. 455–480. ISBN 978-0-387-25497-5.
- ^ a b Euzéby JP, Parte AC. "Flavobacteriaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 29, 2021.
- ^ Zan J, Li Z, Tianero MD, Davis J, Hill RT, Donia MS. (2019). "A microbial factory for defensive kahalalides in a tripartite marine symbiosis". Science. 364 (6445): eaaw6732. doi:10.1126/science.aaw6732. PMID 31196985. S2CID 189818260.CS1 maint: uses authors parameter (link)
- ^ García-López M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Göker M. (2019). "Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes". Front Microbiol. 10: 2083. doi:10.3389/fmicb.2019.02083. PMC 6767994. PMID 31608019.
Categories:
- Flavobacteria
- Flavobacteria stubs