HOMER1

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HOMER1
Protein HOMER1 PDB 1ddv.png
Identifiers
AliasesHOMER1, HOMER, HOMER1A, HOMER1B, HOMER1C, SYN47, Ves-1, homer scaffolding protein 1, homer scaffold protein 1
External IDsOMIM: 604798 MGI: 1347345 HomoloGene: 3155 GeneCards: HOMER1
Orthologs
SpeciesHumanMouse
Entrez

9456

26556

Ensembl

ENSG00000152413

ENSMUSG00000007617

UniProt

Q86YM7

Q9Z2Y3

RefSeq (mRNA)

NM_004272
NM_001277077
NM_001277078

NM_001284189
NM_011982
NM_147176
NM_152134
NM_001347598

RefSeq (protein)

NP_001264006
NP_001264007
NP_004263

NP_001271118
NP_001334527
NP_036112
NP_671705
NP_687036

Location (UCSC)Chr 5: 79.37 – 79.51 MbChr 13: 93.44 – 93.54 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Homer protein homolog 1 or Homer1 is a neuronal protein that in humans is encoded by the HOMER1 gene.[5][6][7] Other names are Vesl and PSD-Zip45.

Structure[]

Homer1 protein has an N-terminal EVH1 domain, involved in protein interaction, and a C-terminal coiled-coil domain involved in self association. It consists of two major splice variants, short-form (Homer1a) and long-form (Homer1b and c). Homer1a has only EVH1 domain and is monomeric while Homer1b and 1c have both EVH1 and coiled-coil domains and are tetrameric.[8][9] The coiled-coil can be further separated into N-terminal half and C-terminal half. The N-terminal half of the coiled-coil domain is predicted to be a parallel dimer while the C-terminus half is a hybrid of dimeric and anti-parallel tetrameric coiled-coil. As a whole, long Homer is predicted to have a dumbbell-like structure where two pairs of EVH1 domains are located on two sides of long (~50 nm) coiled-coil domain.[9] Mammals have Homer2 and Homer3, in addition to Homer1, which have similar domain structure. They also have similar alternatively spliced forms.

Dimeric-tetrameric coiled-coil domain of Homer1b. PDB rendering based on 3CVE.

Tissue distribution[]

Homer1 is expressed widely in the central nervous system as well as peripheral tissue including heart, kidney, ovary, testis, and skeletal muscle. Subcellularly in neurons, Homer1 is concentrated in postsynaptic structures and constitutes a major part of the postsynaptic density.

Function[]

EVH1 domain interacts with PPXXF motif. This sequence motif exists in group 1 metabotrophic glutamate receptor (mGluR1 and mGluR5), IP3 receptors (IP3R), Shank, transient receptor potential canonical (TRPC) family channels, drebrin, , dynamin3, CENTG1, and ryanodin receptor.[5][7][10][11][12][13] Through its tetrameric structure, long forms of Homer (such as Homer1b and Homer1c) are proposed to cross link different proteins. For example, group 1 mGluR is crossed linked with its signaling downstream, IP3 receptor.[10] Also, through crosslinking another multimeric protein Shank, it is proposed to comprise a core of the postsynaptic density.[9]

Notably, the expression of Homer1a is induced by neuronal activity while that of Homer1b and 1c are constitutive. Thus Homer1a is classified as an immediate early gene. Homer1a, acts as a natural that blocks interaction between long-forms and their ligand proteins by competing with the EVH1 binding site on the ligand proteins. In this way, the short form of Homer uncouples mGluR signaling and also shrinks dendritic spine structure.[6][14] Therefore, the short form of Homer is considered to be a part of a mechanism of homeostatic plasticity that dampens the neuronal responsiveness when input activity is too high. The long form Homer1c plays a role in synaptic plasticity and the stabilization of synaptic changes during long-term potentiation.[15]

The coiled-coil domain is reported to interact with and activated Cdc42. The interaction with Cdc42 inhibit the activity of Cdc42 to remodel dendritic spine structure.

See also[]

References[]

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000152413 - Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000007617 - Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ a b Shiraishi-Yamaguchi Y, Furuichi T (2007). "The Homer family proteins". Genome Biol. 8 (2): 206. doi:10.1186/gb-2007-8-2-206. PMC 1852408. PMID 17316461.
  6. ^ a b Tu JC, Xiao B, Yuan JP, Lanahan AA, Leoffert K, Li M, Linden DJ, Worley PF (Dec 1998). "Homer binds a novel proline-rich motif and links group 1 metabotropic glutamate receptors with IP3 receptors". Neuron. 21 (4): 717–26. doi:10.1016/S0896-6273(00)80589-9. PMID 9808459. S2CID 2851554.
  7. ^ a b "Entrez Gene: HOMER1 homer homolog 1 (Drosophila)".
  8. ^ Hayashi MK, Ames HM, Hayashi Y (Aug 2006). "Tetrameric hub structure of postsynaptic scaffolding protein homer". J. Neurosci. 26 (33): 8492–501. doi:10.1523/JNEUROSCI.2731-06.2006. PMC 6674353. PMID 16914674.
  9. ^ a b c Hayashi MK, Tang C, Verpelli C, Narayanan R, Stearns MH, Xu RM, Li H, Sala C, Hayashi Y (Apr 2009). "The postsynaptic density proteins Homer and Shank form a polymeric network structure". Cell. 137 (1): 159–71. doi:10.1016/j.cell.2009.01.050. PMC 2680917. PMID 19345194.
  10. ^ a b Xiao B, Tu JC, Petralia RS, Yuan JP, Doan A, Breder CD, Ruggiero A, Lanahan AA, Wenthold RJ, Worley PF (Dec 1998). "Homer regulates the association of group 1 metabotropic glutamate receptors with multivalent complexes of homer-related, synaptic proteins". Neuron. 21 (4): 707–16. doi:10.1016/S0896-6273(00)80588-7. PMID 9808458. S2CID 16431031.
  11. ^ Rong R, Ahn JY, Huang H, Nagata E, Kalman D, Kapp JA, Tu J, Worley PF, Snyder SH, Ye K (Nov 2003). "PI3 kinase enhancer-Homer complex couples mGluRI to PI3 kinase, preventing neuronal apoptosis". Nat. Neurosci. 6 (11): 1153–61. doi:10.1038/nn1134. PMID 14528310. S2CID 807407.
  12. ^ Hwang SY, Wei J, Westhoff JH, Duncan RS, Ozawa F, Volpe P, Inokuchi K, Koulen P (Aug 2003). "Differential functional interaction of two Vesl/Homer protein isoforms with ryanodine receptor type 1: a novel mechanism for control of intracellular calcium signaling". Cell Calcium. 34 (2): 177–84. doi:10.1016/S0143-4160(03)00082-4. PMID 12810060.
  13. ^ Feng W, Tu J, Yang T, Vernon PS, Allen PD, Worley PF, Pessah IN (Nov 2002). "Homer regulates gain of ryanodine receptor type 1 channel complex". J. Biol. Chem. 277 (47): 44722–30. doi:10.1074/jbc.M207675200. PMID 12223488.
  14. ^ Sala C, Futai K, Yamamoto K, Worley PF, Hayashi Y, Sheng M (Jul 2003). "Inhibition of dendritic spine morphogenesis and synaptic transmission by activity-inducible protein Homer1a". J Neurosci. 23 (15): 6327–37. doi:10.1523/JNEUROSCI.23-15-06327.2003. PMC 6740555. PMID 12867517.
  15. ^ Meyer D, Bonhoeffer T, Scheuss V (2014). "Balance and stability of synaptic structures during synaptic plasticity". Neuron. 82 (2): 430–43. doi:10.1016/j.neuron.2014.02.031. PMID 24742464.

Further reading[]

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