StarBase (biological database)

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StarBase
Database.png
Content
DescriptionmicroRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.
Contact
Research centerSun Yat-sen University
LaboratoryKey Laboratory of Gene Engineering of the Ministry of Education
AuthorsJian-Hua Yang
Primary citationYang & al. (2011)[1]
Release date2010
Access
Websitehttp://starbase.sysu.edu.cn/

StarBase[2] is a database for decoding miRNA-mRNA, miRNA-lncRNA,[3] miRNA-, miRNA-circRNA,[3] miRNA-pseudogene, protein-lncRNA,[4] protein-ncRNA, protein-mRNA interactions, and ceRNA networks[5] from CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data.[1][6] StarBase provides miRFunction and ceRNAFunction web tools to predict the function of ncRNAs (miRNAs, lncRNAs, pseudogenes) and protein-coding genes from the miRNA and ceRNA[7] regulatory networks. StarBase also developed Pan-Cancer Analysis Platform to decipher Pan-Cancer Analysis Networks of lncRNAs, miRNAs, ceRNAs, and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (including more than six thousand samples) from Data Portal.

See also[]

References[]

  1. ^ a b Yang, Jian-Hua; Li Jun-Hao; Shao Peng; Zhou Hui; Chen Yue-Qin; Qu Liang-Hu (Jan 2011). "starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data". Nucleic Acids Res. England. 39 (Database issue): D202-9. doi:10.1093/nar/gkq1056. PMC 3013664. PMID 21037263.
  2. ^ http://starbase.sysu.edu.cn/
  3. ^ a b http://starbase.sysu.edu.cn/mirLncRNA.php
  4. ^ http://starbase.sysu.edu.cn/rbpLncRNA.php
  5. ^ http://starbase.sysu.edu.cn/mrnaCeRNA.php
  6. ^ Li, JH; Liu, S; Zhou, H; Qu, LH; Yang, JH (Dec 1, 2013). "starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data". Nucleic Acids Research. 42 (1): D92-7. doi:10.1093/nar/gkt1248. PMC 3964941. PMID 24297251.
  7. ^ "Archived copy". starbase.sysu.edu.cn. Archived from the original on 15 March 2014. Retrieved 13 January 2022.{{cite web}}: CS1 maint: archived copy as title (link)

External links[]


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