Locality-sensitive hashing

In computer science, locality-sensitive hashing (LSH) is an algorithmic technique that hashes similar input items into the same "buckets" with high probability.^[1] (The number of buckets is much smaller than the universe of possible input items.)^[1] Since similar items end up in the same buckets, this technique can be used for data clustering and nearest neighbor search. It differs from conventional hashing techniques in that hash collisions are maximized, not minimized. Alternatively, the technique can be seen as a way to reduce the dimensionality of high-dimensional data; high-dimensional input items can be reduced to low-dimensional versions while preserving relative distances between items.

Hashing-based approximate nearest neighbor search algorithms generally use one of two main categories of hashing methods: either data-independent methods, such as locality-sensitive hashing (LSH); or data-dependent methods, such as Locality-preserving hashing (LPH).^[2][3]

Definitions[]

An LSH family^[1][4][5] ${\displaystyle {\mathcal {F}}}$ is defined for a metric space ${\displaystyle {\mathcal {M}}=(M,d)}$, a threshold ${\displaystyle R>0}$ and an approximation factor ${\displaystyle c>1}$. This family ${\displaystyle {\mathcal {F}}}$ is a family of functions ${\displaystyle h:M\to S}$ which map elements from the metric space to buckets ${\displaystyle s\in S}$. The LSH family satisfies the following conditions for any two points ${\displaystyle p,q\in M}$, using a function ${\displaystyle h\in {\mathcal {F}}}$ which is chosen uniformly at random:

• if ${\displaystyle d(p,q)\leq R}$, then ${\displaystyle h(p)=h(q)}$ (i.e., p and q collide) with probability at least ${\displaystyle P_{1}}$,
• if ${\displaystyle d(p,q)\geq cR}$, then ${\displaystyle h(p)=h(q)}$ with probability at most ${\displaystyle P_{2}}$.

A family is interesting when ${\displaystyle P_{1}>P_{2}}$. Such a family ${\displaystyle {\mathcal {F}}}$ is called ${\displaystyle (R,cR,P_{1},P_{2})}$-sensitive.

Alternatively^[6] it is defined with respect to a universe of items U that have a similarity function ${\displaystyle \phi :U\times U\to [0,1]}$. An LSH scheme is a family of hash functions H coupled with a probability distribution D over the functions such that a function ${\displaystyle h\in H}$ chosen according to D satisfies the property that ${\displaystyle Pr_{h\in H}[h(a)=h(b)]=\phi (a,b)}$ for any ${\displaystyle a,b\in U}$.

Locality-preserving hashing[]

A locality-preserving hashing is a hash function f that maps a point or points in a multidimensional coordinate space to a scalar value, such that if we have three points A, B and C such that

${\displaystyle |A-B|<|B-C|\Rightarrow |f(A)-f(B)|<|f(B)-f(C)|.\,}$

In other words, these are hash functions where the relative distance between the input values is preserved in the relative distance between the output hash values; input values that are closer to each other will produce output hash values that are closer to each other.

This is in contrast to cryptographic hash functions and checksums, which are designed to have random output difference between adjacent inputs.

Locality preserving hashes are related to space-filling curves.^[how?]

Amplification[]

Given a ${\displaystyle (d_{1},d_{2},p_{1},p_{2})}$-sensitive family ${\displaystyle {\mathcal {F}}}$, we can construct new families ${\displaystyle {\mathcal {G}}}$ by either the AND-construction or OR-construction of ${\displaystyle {\mathcal {F}}}$.^[1]

To create an AND-construction, we define a new family ${\displaystyle {\mathcal {G}}}$ of hash functions g, where each function g is constructed from k random functions ${\displaystyle h_{1},...,h_{k}}$ from ${\displaystyle {\mathcal {F}}}$. We then say that for a hash function ${\displaystyle g\in {\mathcal {G}}}$, ${\displaystyle g(x)=g(y)}$ if and only if all ${\displaystyle h_{i}(x)=h_{i}(y)}$ for ${\displaystyle i=1,2,...,k}$. Since the members of ${\displaystyle {\mathcal {F}}}$ are independently chosen for any ${\displaystyle g\in {\mathcal {G}}}$, ${\displaystyle {\mathcal {G}}}$ is a ${\displaystyle (d_{1},d_{2},p_{1}^{k},p_{2}^{k})}$-sensitive family.

To create an OR-construction, we define a new family ${\displaystyle {\mathcal {G}}}$ of hash functions g, where each function g is constructed from k random functions ${\displaystyle h_{1},...,h_{k}}$ from ${\displaystyle {\mathcal {F}}}$. We then say that for a hash function ${\displaystyle g\in {\mathcal {G}}}$, ${\displaystyle g(x)=g(y)}$ if and only if ${\displaystyle h_{i}(x)=h_{i}(y)}$ for one or more values of i. Since the members of ${\displaystyle {\mathcal {F}}}$ are independently chosen for any ${\displaystyle g\in {\mathcal {G}}}$, ${\displaystyle {\mathcal {G}}}$ is a ${\displaystyle (d_{1},d_{2},1-(1-p_{1})^{k},1-(1-p_{2})^{k})}$-sensitive family.

Applications[]

LSH has been applied to several problem domains, including:

• Near-duplicate detection^[7]
• Hierarchical clustering^[8][9]
• Genome-wide association study^[10]
• Image similarity identification
  • VisualRank
• Gene expression similarity identification^{[citation needed]}
• Audio similarity identification
• Nearest neighbor search
• Audio fingerprint^[11]
• Digital video fingerprinting
• Physical data organization in database management systems^[12]
• Training fully connected neural networks^[13][14]

• Computer security^[15]

Methods[]

Bit sampling for Hamming distance[]

One of the easiest ways to construct an LSH family is by bit sampling.^[5] This approach works for the Hamming distance over d-dimensional vectors ${\displaystyle \{0,1\}^{d}}$. Here, the family ${\displaystyle {\mathcal {F}}}$ of hash functions is simply the family of all the projections of points on one of the ${\displaystyle d}$ coordinates, i.e., ${\displaystyle {\mathcal {F}}=\{h:\{0,1\}^{d}\to \{0,1\}\mid h(x)=x_{i}{\text{ for some }}i\in \{1,...,d\}\}}$, where ${\displaystyle x_{i}}$ is the ${\displaystyle i}$th coordinate of ${\displaystyle x}$. A random function ${\displaystyle h}$ from ${\displaystyle {\mathcal {F}}}$ simply selects a random bit from the input point. This family has the following parameters: ${\displaystyle P_{1}=1-R/d}$, ${\displaystyle P_{2}=1-cR/d}$.^{[clarification needed]}

Min-wise independent permutations[]

Suppose U is composed of subsets of some ground set of enumerable items S and the similarity function of interest is the Jaccard index J. If π is a permutation on the indices of S, for ${\displaystyle A\subseteq S}$ let ${\displaystyle h(A)=\min _{a\in A}\{\pi (a)\}}$. Each possible choice of π defines a single hash function h mapping input sets to elements of S.

Define the function family H to be the set of all such functions and let D be the uniform distribution. Given two sets ${\displaystyle A,B\subseteq S}$ the event that ${\displaystyle h(A)=h(B)}$ corresponds exactly to the event that the minimizer of π over ${\displaystyle A\cup B}$ lies inside ${\displaystyle A\cap B}$. As h was chosen uniformly at random, ${\displaystyle Pr[h(A)=h(B)]=J(A,B)\,}$ and ${\displaystyle (H,D)\,}$ define an LSH scheme for the Jaccard index.

Because the symmetric group on n elements has size n!, choosing a truly random permutation from the full symmetric group is infeasible for even moderately sized n. Because of this fact, there has been significant work on finding a family of permutations that is "min-wise independent" — a permutation family for which each element of the domain has equal probability of being the minimum under a randomly chosen π. It has been established that a min-wise independent family of permutations is at least of size ${\displaystyle \operatorname {lcm} (1,2,\cdots ,n)\geq e^{n-o(n)}}$,^[16] and that this bound is tight.^[17]

Because min-wise independent families are too big for practical applications, two variant notions of min-wise independence are introduced: restricted min-wise independent permutations families, and approximate min-wise independent families. Restricted min-wise independence is the min-wise independence property restricted to certain sets of cardinality at most k.^[18] Approximate min-wise independence differs from the property by at most a fixed ε.^[19]

Open source methods[]

Nilsimsa Hash[]

Nilsimsa is a locality-sensitive hashing algorithm used in anti-spam efforts.^[20] The goal of Nilsimsa is to generate a hash digest of an email message such that the digests of two similar messages are similar to each other. The paper suggests that the Nilsimsa satisfies three requirements:

1. The digest identifying each message should not vary significantly for changes that can be produced automatically.
2. The encoding must be robust against intentional attacks.
3. The encoding should support an extremely low risk of false positives.

TLSH[]

TLSH is locality-sensitive hashing algorithm designed for a range of security and digital forensic applications.^[21] The goal of TLSH is to generate hash digests for messages such that low distances between digests indicate that their corresponding messages are likely to be similar.

Testing performed in the paper on a range of file types identified the Nilsimsa hash as having a significantly higher false positive rate when compared to other similarity digest schemes such as TLSH, Ssdeep and Sdhash.

An implementation of TLSH is available as open-source software.^[22]

Random projection[]

For small angles (not too close to orthogonal), ${\displaystyle 1-{\frac {\theta }{\pi }}}$ is a pretty good approximation to ${\displaystyle \cos(\theta )}$.

The random projection method of LSH due to Moses Charikar^[6] called SimHash (also sometimes called arccos^[23]) is designed to approximate the cosine distance between vectors. The basic idea of this technique is to choose a random hyperplane (defined by a normal unit vector r) at the outset and use the hyperplane to hash input vectors.

Given an input vector v and a hyperplane defined by r, we let ${\displaystyle h(v)=sgn(v\cdot r)}$. That is, ${\displaystyle h(v)=\pm 1}$ depending on which side of the hyperplane v lies.

Each possible choice of r defines a single function. Let H be the set of all such functions and let D be the uniform distribution once again. It is not difficult to prove that, for two vectors ${\displaystyle u,v}$, ${\displaystyle Pr[h(u)=h(v)]=1-{\frac {\theta (u,v)}{\pi }}}$, where ${\displaystyle \theta (u,v)}$ is the angle between u and v. ${\displaystyle 1-{\frac {\theta (u,v)}{\pi }}}$ is closely related to ${\displaystyle \cos(\theta (u,v))}$.

In this instance hashing produces only a single bit. Two vectors' bits match with probability proportional to the cosine of the angle between them.

Stable distributions[]

The hash function ^[24] ${\displaystyle h_{\mathbf {a} ,b}({\boldsymbol {\upsilon }}):{\mathcal {R}}^{d}\to {\mathcal {N}}}$ maps a d dimensional vector ${\displaystyle {\boldsymbol {\upsilon }}}$ onto the set of integers. Each hash function in the family is indexed by a choice of random ${\displaystyle \mathbf {a} }$ and ${\displaystyle b}$ where ${\displaystyle \mathbf {a} }$ is a d dimensional vector with entries chosen independently from a stable distribution and ${\displaystyle b}$ is a real number chosen uniformly from the range [0,r]. For a fixed ${\displaystyle \mathbf {a} ,b}$ the hash function ${\displaystyle h_{\mathbf {a} ,b}}$ is given by ${\displaystyle h_{\mathbf {a} ,b}({\boldsymbol {\upsilon }})=\left\lfloor {\frac {\mathbf {a} \cdot {\boldsymbol {\upsilon }}+b}{r}}\right\rfloor }$.

Other construction methods for hash functions have been proposed to better fit the data. ^[25] In particular k-means hash functions are better in practice than projection-based hash functions, but without any theoretical guarantee.

LSH algorithm for nearest neighbor search[]

One of the main applications of LSH is to provide a method for efficient approximate nearest neighbor search algorithms. Consider an LSH family ${\displaystyle {\mathcal {F}}}$. The algorithm has two main parameters: the width parameter k and the number of hash tables L.

In the first step, we define a new family ${\displaystyle {\mathcal {G}}}$ of hash functions g, where each function g is obtained by concatenating k functions ${\displaystyle h_{1},...,h_{k}}$ from ${\displaystyle {\mathcal {F}}}$, i.e., ${\displaystyle g(p)=[h_{1}(p),...,h_{k}(p)]}$. In other words, a random hash function g is obtained by concatenating k randomly chosen hash functions from ${\displaystyle {\mathcal {F}}}$. The algorithm then constructs L hash tables, each corresponding to a different randomly chosen hash function g.

In the preprocessing step we hash all n points from the data set S into each of the L hash tables. Given that the resulting hash tables have only n non-zero entries, one can reduce the amount of memory used per each hash table to ${\displaystyle O(n)}$ using standard hash functions.

Given a query point q, the algorithm iterates over the L hash functions g. For each g considered, it retrieves the data points that are hashed into the same bucket as q. The process is stopped as soon as a point within distance ${\displaystyle cR}$ from q is found.

Given the parameters k and L, the algorithm has the following performance guarantees:

• preprocessing time: ${\displaystyle O(nLkt)}$, where t is the time to evaluate a function ${\displaystyle h\in {\mathcal {F}}}$ on an input point p;
• space: ${\displaystyle O(nL)}$, plus the space for storing data points;
• query time: ${\displaystyle O(L(kt+dnP_{2}^{k}))}$;
• the algorithm succeeds in finding a point within distance ${\displaystyle cR}$ from q (if there exists a point within distance R) with probability at least ${\displaystyle 1-(1-P_{1}^{k})^{L}}$;

For a fixed approximation ratio ${\displaystyle c=1+\epsilon }$ and probabilities ${\displaystyle P_{1}}$ and ${\displaystyle P_{2}}$, one can set ${\displaystyle k=\lceil {\log n \over \log 1/P_{2}}\rceil }$ and ${\displaystyle L=\lceil P_{1}^{-k}\rceil =O(n^{\rho }P_{1}^{-1})}$, where ${\displaystyle \rho ={\log P_{1} \over \log P_{2}}}$. Then one obtains the following performance guarantees:

• preprocessing time: ${\displaystyle O(n^{1+\rho }P_{1}^{-1}kt)}$;
• space: ${\displaystyle O(n^{1+\rho }P_{1}^{-1})}$, plus the space for storing data points;
• query time: ${\displaystyle O(n^{\rho }P_{1}^{-1}(kt+d))}$;

See also[]

• Bloom filter
• Curse of dimensionality
• Feature hashing
• Fourier-related transforms
• Geohash
• Multilinear subspace learning
• Principal component analysis
• Random indexing^[26]
• Rolling hash
• Singular value decomposition
• Sparse distributed memory
• Wavelet compression

References[]

Further reading[]

• Samet, H. (2006) Foundations of Multidimensional and Metric Data Structures. Morgan Kaufmann. ISBN 0-12-369446-9

• Indyk, Piotr; Motwani, Rajeev; Raghavan, Prabhakar; Vempala, Santosh (1997). "Locality-preserving hashing in multidimensional spaces". Proceedings of the twenty-ninth annual ACM symposium on Theory of computing. STOC '97. pp. 618–625. CiteSeerX 10.1.1.50.4927. doi:10.1145/258533.258656. ISBN 978-0-89791-888-6. S2CID 15693787.
• Chin, Andrew (1994). "Locality-preserving hash functions for general purpose parallel computation" (PDF). Algorithmica. 12 (2–3): 170–181. doi:10.1007/BF01185209. S2CID 18108051.

External links[]

• Alex Andoni's LSH homepage
• LSHKIT: A C++ Locality Sensitive Hashing Library
• A Python Locality Sensitive Hashing library that optionally supports persistence via redis
• Caltech Large Scale Image Search Toolbox: a Matlab toolbox implementing several LSH hash functions, in addition to Kd-Trees, Hierarchical K-Means, and Inverted File search algorithms.
• Slash: A C++ LSH library, implementing Spherical LSH by Terasawa, K., Tanaka, Y
• LSHBOX: An Open Source C++ Toolbox of Locality-Sensitive Hashing for Large Scale Image Retrieval, Also Support Python and MATLAB.
• SRS: A C++ Implementation of An In-memory, Space-efficient Approximate Nearest Neighbor Query Processing Algorithm based on p-stable Random Projection
• TLSH open source on Github
• JavaScript port of TLSH (Trend Micro Locality Sensitive Hashing) bundled as node.js module
• Java port of TLSH (Trend Micro Locality Sensitive Hashing) bundled as maven package