Sudan ebolavirus
Sudan ebolavirus | |
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Virus classification ![]() | |
(unranked): | Virus |
Realm: | Riboviria |
Kingdom: | Orthornavirae |
Phylum: | Negarnaviricota |
Class: | Monjiviricetes |
Order: | Mononegavirales |
Family: | Filoviridae |
Genus: | Ebolavirus |
Species: | Sudan ebolavirus
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Member virus | |
Sudan virus (SUDV) |
The species Sudan ebolavirus is a virological taxon included in the genus Ebolavirus, family Filoviridae, order Mononegavirales. The species has a single virus member, Sudan virus (SUDV).[1] The members of the species are called Sudan ebolaviruses.[1]
Nomenclature[]
The name Sudan ebolavirus is derived from Sudan (the country in which Sudan virus was first discovered) and the taxonomic suffix ebolavirus (which denotes an ebolavirus species).[1]
The species was introduced in 1998 as Sudan Ebola virus.[2][3] In 2002, the name was changed to Sudan ebolavirus.[4][5]
A virus of the genus Ebolavirus is a member of the species Sudan ebolavirus if:[1]
- it is endemic in Sudan and/or Uganda
- it has a genome with three gene overlaps (VP35/VP40, GP/VP30, VP24/L)
- it has a genomic sequence different from Ebola virus by ≥30% but different from that of Sudan virus by <30%
Sudan virus (SUDV) is one of six known viruses within the genus Ebolavirus and one of the four that causes Ebola virus disease (EVD) in humans and other primates; it is the sole member of the species Sudan ebolavirus. SUDV is a Select agent, World Health Organization Risk Group 4 Pathogen (requiring Biosafety Level 4-equivalent containment), National Institutes of Health/National Institute of Allergy and Infectious Diseases Category A Priority Pathogen, Centers for Disease Control and Prevention Category A Bioterrorism Agent, and listed as a Biological Agent for Export Control by the Australia Group.[citation needed]
The first known outbreak of EVD occurred due to Sudan virus in South Sudan between June and November 1976, infecting 284 people and killing 151, with the first identifiable case on 27 June 1976.[6][7][8]
Use of term[]
Sudan virus (abbreviated SUDV) was first described in 1977.[9] It is the single member of the species Sudan ebolavirus, which is included into the genus Ebolavirus, family Filoviridae, order Mononegavirales.[1] The name Sudan virus is derived from South Sudan (where it was first discovered before South Sudan seceded from Sudan[10]) and the taxonomic suffix virus.[citation needed]
Previous designations[]
Sudan virus was first introduced as a new "strain" of Ebola virus in 1977.[9] Sudan virus was described as "Ebola haemorrhagic fever" in a 1978 WHO report describing the 1976 Sudan outbreak.[11] In 2000, it received the designation Sudan Ebola virus[12][13] and in 2002 the name was changed to Sudan ebolavirus.[4][5] Previous abbreviations for the virus were EBOV-S (for Ebola virus Sudan) and most recently SEBOV (for Sudan Ebola virus or Sudan ebolavirus). The virus received its final designation in 2010, when it was renamed Sudan virus (SUDV).[1]
Virus inclusion criteria[]
A virus of the species Sudan ebolavirus is a Sudan virus (SUDV) if it has the properties of Sudan ebolaviruses and if its genome diverges from that of the prototype Sudan virus, Sudan virus variant Boniface (SUDV/Bon), by ≤10% at the nucleotide level.[1]
Disease[]
SUDV is one of four ebolaviruses that causes Ebola virus disease (EVD) in humans (in the literature also often referred to as Ebola hemorrhagic fever, EHF). EVD due to SUDV infection cannot be differentiated from EVD caused by other ebolaviruses by clinical observation alone, which is why the clinical presentation and pathology of infections by all ebolaviruses is presented together on a separate page (see Ebola virus disease). In the past, SUDV has caused the following EVD outbreaks:[citation needed]
Year | Geographic location | Human cases/deaths (case-fatality rate) |
1976 | Juba, Maridi, Nzara, and Tembura, South Sudan | 284/151 (53%) |
1979 | Nzara, South Sudan | 34/22 (65%) |
2000–2001 | Gulu, Mbarara, and Masindi Districts, Uganda | 425/224 (53%) |
2004 | Yambio County, South Sudan | 17/7 (41%) |
2011 | Luweero District, Uganda | 1/1 (100%) |
2014 | Equateur, Congo[14] | 0/1 * two strains reported, one Sudan and one Sudan/Zaire Hybrid to 24/08/2014(0%) |
Research[]
The Public Health Agency of Canada has a candidate rVSV vaccine for Sudan ebolavirus (). Merck was developing it, but discontinued development.[15]
Ecology[]
The ecology of SUDV is currently unclear and no reservoir host has yet been identified. Therefore, it remains unclear how SUDV was repeatedly introduced into human populations. Bats are suspected to harbor the virus because infectious Marburg virus (MARV), a distantly related filovirus, has been isolated from bats,[16] and because traces (but no infectious particles) of the more closely related Ebola virus (EBOV) were found in bats as well.[17]
Molecular biology[]
SUDV is basically uncharacterized on a molecular level. However, its genomic sequence, and with it the genomic organization and the conservation of individual open reading frames, is similar to that of the other four known ebolaviruses. It is therefore currently assumed that the knowledge obtained for EBOV can be extrapolated to SUDV and that all SUDV proteins behave analogous to those of EBOV.[citation needed]
References[]
- ^ Jump up to: a b c d e f g Kuhn, Jens H.; Becker, Stephan; Ebihara, Hideki; Geisbert, Thomas W.; Johnson, Karl M.; Kawaoka, Yoshihiro; Lipkin, W. Ian; Negredo, Ana I; et al. (2010). "Proposal for a revised taxonomy of the family Filoviridae: Classification, names of taxa and viruses, and virus abbreviations". Archives of Virology. 155 (12): 2083–103. doi:10.1007/s00705-010-0814-x. PMC 3074192. PMID 21046175.
- ^ Netesov, S. V.; Feldmann, H.; Jahrling, P. B.; Klenk, H. D.; Sanchez, A. (2000). "Family Filoviridae". In van Regenmortel, M. H. V.; Fauquet, C. M.; Bishop, D. H. L.; Carstens, E. B.; Estes, M. K.; Lemon, S. M.; Maniloff, J.; Mayo, M. A.; McGeoch, D. J.; Pringle, C. R.; Wickner, R. B. (eds.). Virus Taxonomy—Seventh Report of the International Committee on Taxonomy of Viruses. San Diego, USA: Academic Press. pp. 539–48. ISBN 978-0-12-370200-5.
- ^ Pringle, C. R. (1998). "Virus taxonomy-San Diego 1998". Archives of Virology. 143 (7): 1449–59. doi:10.1007/s007050050389. PMID 9742051. S2CID 13229117.
- ^ Jump up to: a b Feldmann, H.; Geisbert, T. W.; Jahrling, P. B.; Klenk, H.-D.; Netesov, S. V.; Peters, C. J.; Sanchez, A.; Swanepoel, R.; Volchkov, V. E. (2005). "Family Filoviridae". In Fauquet, C. M.; Mayo, M. A.; Maniloff, J.; Desselberger, U.; Ball, L. A. (eds.). Virus Taxonomy – Eighth Report of the International Committee on Taxonomy of Viruses. San Diego, USA: Elsevier/Academic Press. pp. 645–653. ISBN 978-0-12-370200-5{{inconsistent citations}}CS1 maint: postscript (link)
- ^ Jump up to: a b Mayo, M. A. (2002). "ICTV at the Paris ICV: results of the plenary session and the binomial ballot". Archives of Virology. 147 (11): 2254–60. doi:10.1007/s007050200052. S2CID 43887711.
- ^ "Ebola haemorrhagic fever in Sudan, 1976" (PDF). Archived from the original (PDF) on 13 October 2014.
- ^ Feldmann, H.; Geisbert, T. W. (2011). "Ebola haemorrhagic fever". The Lancet. 377 (9768): 849–862. doi:10.1016/S0140-6736(10)60667-8. PMC 3406178. PMID 21084112.
- ^ Hoenen T, Groseth A, Feldmann H (July 2012). "Current ebola vaccines". Expert Opin Biol Ther. 12 (7): 859–72. doi:10.1517/14712598.2012.685152. PMC 3422127. PMID 22559078.
- ^ Jump up to: a b Bowen, E. T. W.; Lloyd, G.; Harris, W. J.; Platt, G. S.; Baskerville, A.; Vella, E. E. (1977). "Viral haemorrhagic fever in southern Sudan and northern Zaire, Preliminary studies on the aetiological agent". Lancet. 309 (8011): 571–3. doi:10.1016/s0140-6736(77)92001-3. PMID 65662. S2CID 3092094.
- ^ Nzara, South Sudan
- ^ "Home" (PDF). Archived from the original (PDF) on 13 October 2014. Retrieved 11 February 2015.
- ^ Netesov, S. V.; Feldmann, H.; Jahrling, P. B.; Klenk, H. D.; Sanchez, A. (2000). "Family Filoviridae". In van Regenmortel, M. H. V.; Fauquet, C. M.; Bishop, D. H. L.; Carstens, E. B.; Estes, M. K.; Lemon, S. M.; Maniloff, J.; Mayo, M. A.; McGeoch, D. J.; Pringle, C. R.; Wickner, R. B. (eds.). Virus Taxonomy – Seventh Report of the International Committee on Taxonomy of Viruses. San Diego, USA: Academic Press. pp. 539–48. ISBN 978-0-12-370200-5{{inconsistent citations}}CS1 maint: postscript (link)
- ^ Pringle, C. R. (1998). "Virus taxonomy-San Diego 1998". Archives of Virology. 143 (7): 1449–59. doi:10.1007/s007050050389. PMID 9742051. S2CID 13229117.
- ^ "Ebola outbreak: DR Congo confirms two deaths". BBC. 24 August 2014.
- ^ "MSF's response to CEPI's policy regarding equitable access". Médecins Sans Frontières Access Campaign.
In vaccine development, access to know how is important. Knowledge and expertise including but not limited to purification techniques, cell lines, materials, software codes and their transfer of this to alternative manufacturers in the event the awardee discontinues development of a promising vaccine is critically important. The recent example of Merck abandoning the development of rVSV vaccines for Marburg (rVSV-MARV) and for Sudan-Ebola (rVSV-SUDV) is a case in point. Merck continues to retain vital know-how on the rVSV platform as it developed the rVSV vaccine for Zaire-Ebola (rVSV-ZEBOV) with funding support from GAVI. While it has transferred the rights on these vaccines back to Public Health Agency of Canada, there is no mechanism to share know how on the rVSV platform with other vaccine developers who would like to also use rVSV as a vector against other pathogens.
- ^ Towner, J. S.; Amman, B. R.; Sealy, T. K.; Carroll, S. A. R.; Comer, J. A.; Kemp, A.; Swanepoel, R.; Paddock, C. D.; Balinandi, S.; Khristova, M. L.; Formenty, P. B.; Albarino, C. G.; Miller, D. M.; Reed, Z. D.; Kayiwa, J. T.; Mills, J. N.; Cannon, D. L.; Greer, P. W.; Byaruhanga, E.; Farnon, E. C.; Atimnedi, P.; Okware, S.; Katongole-Mbidde, E.; Downing, R.; Tappero, J. W.; Zaki, S. R.; Ksiazek, T. G.; Nichol, S. T.; Rollin, P. E. (2009). Fouchier, Ron A. M. (ed.). "Isolation of Genetically Diverse Marburg Viruses from Egyptian Fruit Bats". PLOS Pathogens. 5 (7): e1000536. doi:10.1371/journal.ppat.1000536. PMC 2713404. PMID 19649327.
- ^ Leroy, E. M.; Kumulungui, B.; Pourrut, X.; Rouquet, P.; Hassanin, A.; Yaba, P.; Délicat, A.; Paweska, J. T.; Gonzalez, J. P.; Swanepoel, R. (2005). "Fruit bats as reservoirs of Ebola virus". Nature. 438 (7068): 575–576. Bibcode:2005Natur.438..575L. doi:10.1038/438575a. PMID 16319873. S2CID 4403209.
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