List of bacterial orders

From Wikipedia, the free encyclopedia

This article lists the orders of the Bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI)[2] and the phylogeny is based on 16S rRNA-based LTP release 132 by The All-Species Living Tree Project.[3]

Phylogeny[]

National Center for Biotechnology Information (NCBI) taxonomy was initially used to decorate the genome tree via tax2tree. The 16S rRNA-based taxonomy is used to supplement the taxonomy particularly in regions of the tree with no cultured representatives. List of Prokaryotic names with Standing in Nomenclature (LPSN) is used as the primary taxonomic authority for establishing naming priorities. Taxonomic ranks are normalised using phylorank and the taxonomy manually curated to remove polyphyletic groups.[4][5][6][7][8]

Cladogram was taken from [9][10][11]

Bacteria

"Chloroflexota"

""

"Deinococcota"

"Actinobacterota"

Firmicutes

Armatimonadota

Firmicutes E

Firmicutes G

"Halanaerobiaeota" (Firmicutes F)

"" (Firmicutes B)

"Selenobacteria" (Firmicutes C)

Firmicutes A

Firmicutes D

"Bacillota"

Cyanoprokaryota

""

Cyanobacteria

CPR

Patescibacteria

"Thermotogida"
"Synergistetes"

"Atribacterota"

"Synergistota"

"Thermocalda"

"Dictyoglomota"

""

""

Coprothermobacterota

""

""

"Thermotogota"

"Hydrobacteria"
""

Fusobacterota

Clade 1

""

"Spirochaetota"

"Planctochlora"

Clade 2 cont'd

"Planctobacteria" cont'd

"FCB group"

""

""

""

"Fermentibacteria"

""

"Fibrobacterota"

""

""

""

""

"Gemmatimonadota"

"Zixibacteria"

""

""

"Calditrichaeota" +
"Bacteroidota"

"Proteobacteria" cont'd

Clade 2

""

""

"Poribacteria"

""

""

""

""

"Elusimicrobota"

"Planctobacteria"

""

""

""

"Planctomycetota"

""

"Chlamydota"

"Verrucomicrobiota"

"Proteobacteria"

"" {Nitrospirota_A}

""

""

{Desulfobacterota G}

"" {SZUA-79: SZUA-79}

""

"Chrysiogenota"

"Deferribacterota"

"Aquificota"

"Campylobacterota"

"Acidobacterota"

"Modulibacteria"

""

""

""

"Nitrospinota"

"Nitrospirota"

""

"Desulfobacterota"

"Bdellovibrionota"

""

"Myxococcota"

"" {SAR324}

"Proteobacteria" s.s.

Clade Terrabacteria[]

Phylum "Chloroflexota"[]

Phylogeny of Chloroflexota[9][10][11]
Ktedonobacteria

"Dehalococcoidotia"

Dehalococcoidales

Dehalococcoidia
"Caldilineotia"

"Caldilineidae"

"Anaerolineidae"

""

Anaerolineae
"Chloroflexotia"

""

Chloroflexales

Chloroflexia
  • Class ?"Bathosphaeria"
    • "" Mehrshad et al. 2018 [DTDB tag: JG30-KF-CM66]
  • Class ?"Limnocylindria"
    • "" Mehrshad et al. 2018 (SL56)
  • Class ?"Umbricyclopia"
    • "" Mehrshad et al. 2018 (TK10)
  • Class Ktedobacteria
    • corrig. Cavaletti et al. 2007 (Thermogemmatisporales)
  • Class Dehalococcoidia
    • Dehalococcoidales Löffler et al. 2013
    • Kochetkova et al. 2020
  • Class
    • ? Nakahara et al. 2019
    • Yamada et al. 2006
    • Kawaichi et al. 2013
    • Yamada et al. 2006
    • ""
    • Dodsworth et al. 2014
  • Class Chloroflexia

Phylum "Deinococcota"[]

  • "Deinococcia"
    • Deinococcales Rainey et al. 1997 (Thermales) (radio-resistant micrococci)

Phylum "Actinomycetota"[]

Phylogeny of Actinomycetota[9][10][11]

Coriobacteriia

Coriobacteriales

Rubrobacteria

Rubrobacterales

Thermoleophilia

Gaiellales

Thermoleophilales

Acidimicrobiia

""

Acidimicrobiales

Actinomycetia
Nitriliruptoridae

Euzebyales

Nitriliruptorales

Actinobacteridae

""

Jiangellales

Propionibacteriales

Acidothermales

Streptosporangiales

Sporichthyales

Streptomycetales

Mycobacteriales

Motilibacterales

Actinomycetales

  • ?"" Merino et al. 2020
  • Class ?"" corrig. Liu et al. 2020
  • Class Coriobacteriia
  • Class Rubrobacteria
    • Rubrobacterales Rainey et al. 1997
  • Class Thermoleophilia
    • ?"" Li et al. 2021
    • Gaiellales Albuquerque et al. 2012
    • Thermoleophilales Reddy & Garcia-Pichel 2009 (Solirubrobacterales)
  • Class Acidimicrobiia
    • Acidimicrobiales Stackebrandt, Rainey & Ward-Rainey 1997
    • "" Ghai et al. 2013
  • Class "Actinomycetia"
    • Acidothermales Sen et al. 2014
    • Actinomycetales Buchanan 1917 (Bifidobacteriales; Micrococcales; Kineosporiales)
    • Euzebyales Kurahashi et al. 2010 (Egibacterales)
    • Jiangellales Tang et al. 2015
    • Motilibacterales Salam et al. 2020
    • Mycobacteriales Janke 1924 (Corynebacteriales; Actinoplanales; Actinocatenisporales; Antricoccales; Cryptosporangiales; Frankiales; Geodermatophilales; Glycomycetales; Jatrophihabitantales; Micromonosporales; Nakamurellales; Phytomonosporales; Pseudonocardiales)
    • "" Neuenschwander et al. 2018
    • Nitriliruptorales Sorokin et al. 2009 (Egicoccales)
    • Propionibacteriales Patrick & McDowell 2015
    • Sporichthyales Nouioui et al. 2018
    • Streptomycetales Kampfer 2015 (Catenulisporales)
    • Streptosporangiales Goodfellow 2015

Clade Firmicutes[]

Firmicutes incertae sedis[]

  • "" Sakamoto et al. 2021
  • Class Neupane et al. 2020
    • Neupane et al. 2020
  • Class Thermolithobacteria Sokolova et al. 2007
    • Sokolova et al. 2007

Phylum "Armatimonadota"[]

Phylogeny of Armatimonadota[9][10][11]
Abditibacteriia

Fimbriimonadia

Chthonomonadetes

Armatimonadia

  • Class (FBP)
    • Tahon et al. 2018
  • Class
    • Im et al. 2012
  • Class
    • Lee et al. 2011
  • Class (OP10)
    • Tamaki et al. 2011
    • Li, Kudo & Tonouchi 2018

Phylum []

Phylogeny of Eremiobacterota[9][10][11]
"Xenobia"

""

"Eremiobacteriia"

""

""

  • Class "Xenobia" [GTDB tag: UBP9]
    • ""
  • Class "" (WPS2)
    • ""
    • ""

Phylum Firmicutes E[]

Phylogeny of Firmicutes E[9][10][11]
"Thermaerobacteria"

""

"Symbiobacteriia"

""

"Sulfobacillia"

""

  • Class "Thermaerobacteria"
    • ""
  • Class "Sulfobacillia"
    • "" Cavalier-Smith 2020
  • Class "Symbiobacteriia"
    • ""

Phylum Firmicutes G[]

  • Liu et al. 2014
  • Class Watanabe, Kojima & Fukui 2015
    • Watanabe, Kojima & Fukui 2015

Phylum "Halanaerobiaeota"[]

Phylogeny of Halanaerobiia[9][10][11]

Halanaerobiales

""

  • Class "" Cavalier-Smith 2020

Phylum ""[]

Phylogeny of Desulfotomaculota[9][10][11]
"Dehalobacteriia"

""

"Peptococcia"

""

"Desulfitobacteriia"

""

""

"Moorellia"

""

""

"Syntrophomonadia"

""

""

"Thermincolia"

""

""

"Desulfotomaculia"

""

""

""

  • Class "Dehalobacteriia"
    • ""
  • Class "Peptococcia"
    • ""
    • corrig. Hamilton-Brehm et al. 2021
  • Class "Desulfitobacteriia"
    • ""
    • "" Cavalier-Smith 2020
  • Class "Moorellia"
    • ""
    • ""
    • Lv et al. 2020
  • Class "Syntrophomonadia"
    • ""
    • ""
  • Class "Thermincolia"
    • ""
    • ""
  • Class "Desulfotomaculia" Watanabe, Fukui & Kuever 2020
    • ""
    • ""
    • "" Watanabe, Fukui & Kuever 2020

Phylum "Selenobacteria"[]

Phylogeny of Selenobacteria[9][10][11]

""

""

Selenomonadales

  • Class Negativicutes Marchandin et al. 2010
    • Campbell, Adeolu & Gupta 2015
    • ""
    • Selenomonadales Marchandin et al. 2010
    • "" Cavalier-Smith 2006
    • Campbell, Adeolu & Gupta 2015

Phylum Firmicutes A[]

Phylogeny of Firmicutes A[9][10][11]
"Thermosediminibacteria"

"Thermoanaerobacteria"

""

""

Thermoanaerobacterales

"Mahellia"

""

""

""

Clostridiia

""

Clostridiales

""

""

""

""

""

""

  • Class "Thermosediminibacteria"
    • Zhang et al. 2019
  • Class "Thermoanaerobacteria"
  • Class "Mahellia"
    • ""
  • ""
  • ""
  • Class Clostridiia Rainey 2010 em. Cavalier-Smith 2020
    • Clostridiales Prevot 1953 s.s.
    • Buchanan 1917
    • ""
    • ""
    • ""
    • ""
    • Zhang et al. 2018b
    • ""
    • ""
    • Alauzet et al. 2020

Phylum Firmicutes D[]

Phylogeny of Firmicutes D[9][10][11]
"Proteinivoracia"

""

"Dethiobacteria"

""

"Natranaerobiia"

Natranaerobiales

  • Class "Proteinivoracia"
    • ""
  • Class "Dethiobacteria"
    • ""
  • Class "Natranaerobiia"

Phylum "Bacillota"[]

Phylogeny of Bacillota[9][10][11]
"Alicyclobacillia"

""

""

""

"Desulfuribacillia"

""

"Bacillia"

""

""

""

""

""

""

""

""

DSM-22653

""

""

Bacillales H

Bacillales G

Bacillales E

Bacillales D

Bacillales C

Bacillales

Bacillales B

""

"Erysipelotrichidae"

Lactobacillales

  • Class "Alicyclobacillia" [Firmicutes K]
    • ""
    • ""
    • ""
  • Class "Desulfuribacillia" [Firmicutes J]
    • ""
  • Class "Bacillia" Cavalier-Smith 2020
    • Clade DSM-22653
    • ""
    • Bacillales B
    • Bacillales C
    • Bacillales D
    • Bacillales E
    • Bacillales G
    • Bacillales H
    • Bacillales Prevot 1953 s.s.
    • ""
    • ""
    • ""
    • Peshkoff 1939 [Bacillales A]
    • "Erysipelotrichidae" corrig. Cavalier-Smith 2020
      • Turicibacteraceae Verbarg et al. 2020
      • Haloplasmatales Rainey et al. 2008
      • ""
      • Acholeplasmatales Freundt et al. 1984 (Anaeroplasmatales)
      • Erysipelotrichales Ludwig et al. 2010
      • Mycoplasmatales Freundt 1955 (Entomoplasmatales)
    • ""
    • Lactobacillales Ludwig, Schleifer & Whitman 2010
    • ""
    • ""
    • ""
    • ""
    • ""
    • ""

Clade Cyanoprokaryota[]

Phylum []

  • Class "" Carnevali et al. 2018
  • Class "" Carnevali et al. 2019 [GTDB tag: GWF2_35_9]
  • Class "" Carnevali et al. 2019
  • Class "" Utami et al. 2019
    • "Termititenacales" Utami et al. 2019

Phylum Cyanobacteria[]

Clade Candidate Phyla Radiation[]

Phylogeny of Patescibacteria[9][10][11]

"Wirthbacteria" (CG2-30-54-11)

"Microgenomates"

""

"Katanobacteria"

"" cont'd

cluster

"Gracilibacteria" cont'd

"Saccharibacteria"

"Berkelbacteria"

"" (Kazan)

""

""

cluster
""

""

""

"" (GCA-2792135)

ABY1 cont'd

"" cont'd

cluster

Phylum ""[]

  • Class "Elulimicrobia" Rodriguez-R et al. 2020
    • "" Rodriguez-R et al. 2020

Phylum "Patescibacteria"[]

Phylogeny of Microgenomatia

"Woykebacterales"

"Curtissbacterales"

"Daviesbacterales"

"Roizmanbacterales" (UBA1406)

"Gottesmanbacterales" (UBA10105)

"Levybacterales"

"Shapirobacterales" (UBA12405)

GWA2-44-7

UBA1400

Phylogeny of Gracilibacteria

"Absconditabacterales"

"Gracilibacterales" (BD1-5)

"Abawacabacterales" (RBG-16-42-10)

"Peregrinibacterales" (UBA1369)

"Fertabacterales" (UBA4473)

"Peribacterales"

Phylogeny of ABY1

"Kerfeldbacterales" (SBBC01)

"Jacksonbacterales" (UBA9629)

"Kuenenbacterales" (UBA2196)

"Veblenbacterales"

"Komeilibacterales" (UBA1558)

"Falkowbacterales" (BM507)

"Buchananbacterales"

"Uhrbacterales" (GWA2-46-9)

"Magasanikbacterales"

Phylogeny of Paceibacteria

"Moranbacterales"

UBA9983_A

UBA6257

"Portnoybacterales"

"Parcunitrobacterales" (GWA2-38-13b)

"Paceibacterales"

"Azambacterales" (UBA10092)

"Terrybacterales"

"Yanofskybacterales" (2-02-FULL-40-12)

"Spechtbacterales"

"Sungbacterales"

"Ryanbacterales"

"Tagabacterales"

"WO2-41-13"

  • Class "Wirthbacteria"
  • Class "" (WS6)
  • Class "Katanobacteria" (WWE3)
  • Class ""
    • Clade GWA2-44-7
    • Clade UBA1400
    • "Curtissbacterales"
    • "Daviesbacterales"
    • "Gottesmanbacterales"
    • "Levybacterales"
    • "Roizmanbacterales"
    • "Shapirobacterales"
    • "Woykebacterales" (RIF34)
  • Class "Gracilibacteria"
    • "Abawacabacterales" (RIF46)
    • "Absconditabacterales" (SR1)
    • "Gracilibacterales" (GN02)
    • "Fertabacterales" (DOLZORAL124_38_8)
    • "Peregrinibacterales" (PER)
    • "Peribacterales"
  • Class "Berkelbacteria" (ACD58)
  • Class "" (Kazan)
  • Class "" (CPR2)
  • Class "" (TM7)
    • "Saccharimonadales"
  • Class "" (RIF9)
  • Class "" (SM2F11)
  • Class ""
  • Class "ABY1"
    • ?"Brownbacterales"
    • "Buchananbacterales" (RIF37)
    • "Falkowbacterales"
    • "Jacksonbacterales" (RIF38)
    • "Kerfeldbacterales" (RIF4)
    • "Komeilibacterales" (RIF6)
    • "Kuenenbacterales"
    • "Magasanikbacterales"
    • "Uhrbacterales"
    • "Veblenbacterales" (RIF39)
  • Class ""
    • "Azambacterales"
    • Clade "WO2-41-13" (RIF11)
    • Clade UBA6257
    • Clade UBA9983_A
    • "Moranbacterales" (OD1-i)
    • "Paceibacterales"
    • "Parcunitrobacterales"
    • "Portnoybacterales" (RIF22)
    • "Ryanbacterales" (RIF10)
    • "Spechtbacterales" (RIF19)
    • "Sungbacterales" (RIF17)
    • "Tagabacterales" (RIF12)
    • "Terrybacterales" (RIF13)
    • "Yanofskybacterales"

Clade "Thermotogida"[]

Phylum "Atribacterota"[]

Phylum "Synergistota"[]

  • Class Synergistia
    • Synergistales Jumas-Bilak et al. 2009

Phylum "Dictyoglomota"[]

  • Class Dictyoglomia
    • Dictyoglomales Patel 2012

Phylum ""[]

  • Class Caldisericia (OP5)
    • Caldisericales Mori et al. 2009
  • Class ""
    • ""

Phylum ""[]

  • Class "" (EM19)
    • ""

Phylum ""[]

  • Class ""
    • "" Cavalier-Smith 2020

Phylum Coprothermobacterota[]

Phylum ""[]

  • Class ""
    • "" (KB1 group, OP1)
    • "" [GTDB tag: RIF31; RBG-16-55-9]

Phylum "Thermotogota"[]

Phylogeny of Thermotogota[9][10][11]

Thermotogales

  • Class Thermotogae
    • Itoh et al. 2016
    • Bhandari & Gupta 2014 ()
    • Thermotogales Reysenbach 2002 emend. Bhandari & Gupta 2014

Hydrobacteria[]

Clade 1[]

Phylum Spirochaetota[]

Phylogeny of Spirochaetota[9][10][11]
"Leptospirae"

""

Leptospirales

"Leptospiria"
"Euspirochaetae"

Brevinematales

Brachyspirales

Spirochaetia

Spirochaetales

  • Class
    • Leptospirales Gupta et al. 2014
    • ""
  • Class ""
    • Brevinematales Gupta et al. 2014
  • Class ""
    • Brachyspirales corrig. Gupta et al. 2014
  • Class Spirochaetia

Clade 2[]

Phylum "Poribacteria"[]

  • Class "" Podell et al. 2019
  • Class "" Podell et al. 2019

Phylum ""[]

  • Class "" (OP3)
    • ""

Phylum ""[]

  • Class "Aerophobia" (CD12)
    • ""

Phylum "Elusimicrobiota"[]

  • Class "Elusimicrobia" (TG1)
    • "" Geissinger et al. 2010
  • Class ""
    • "" Zheng et al. 2018

Clade "Fusobacterida"[]

Phylum ""[]

  • Class ""
    • ""

Phylum ""[]

  • Class ""
    • ""
  • Class ""
    • "" Kadnikov et al. 2018

Phylum Fusobacteria[]

Clade Planctobacteria[]

Phylum ""[]

  • Class "" Kadnikov et al. 2018
    • "" Kadnikov et al. 2018

Phylum ""[]

  • Class "" (NKB19)
    • ""

Phylum ""[]

  • Class "" Wiegand et al. 2019
    • "" Wiegand et al. 2019

Phylum "Planctomycetota"[]

Phylogeny of Planctomycetota[9][10][11]
"Brocadiae"

"Brocadiales"

Phycisphaerae

Phycisphaerales

Sedimentisphaerales

Planctomycetia

Gemmatales

Isosphaerales

Planctomycetales

Pirellulales

Phylum "Chlamydiota"[]

Phylum "Verrucomicrobiota"[]

Phylogeny of Verrucomicrobiota[9][10][11]

Verrucomicrobiia

Opitutales

""

""

""

  • Class
    • Qiu et al. 2013
  • Class
    • Cho et al. 2004
    • Cho et al. 2004
  • Class
    • Mu et al. 2020
  • Class
    • Spring et al. 2017
  • Class ""
    • "" Sangwan et al. 2004 ()
    • Opitutales Choo et al. 2007 ()
    • ""
    • "" Op den Camp 2009
    • Ward-Rainey et al. 1996 em. Yoon et al. 2008

Clade FCB group[]

Phylum "Marinimicrobia"[]

(Candidate phylum SAR406; candidate phylum Marine Group A)

Phylum ""[]

  • Class "Mcinerneyibacteria" Yadav et al. 2020
    • "" Yadav et al. 2020

Phylum ""[]

  • Class "" (WOR-3)
  • Class "Hydrothermia" Chuvochina et al. 2019
    • "" Chuvochina et al. 2019 (EM3)
    • LBFQ01 ["Pyropristinus" Colman et al. 2016]

Phylum "Fermentibacteria"[]

  • Class "Fermentibacteria" Kirkegaard 2016 ("Aegiribacteria")
    • "" Kirkegaard 2016 (Hyd24-12)

Phylum ""[]

  • Class "Cloacimonadia"
    • "" (WWE1)

Phylum "Fibrobacterota"[]

  • Class "" (RIF7)
  • Class Chitinivibrionia
    • Chitinivibrionales Sorokin et al. 2014 ("Chitinispirillales")
  • Class Fibrobacteria
    • Spain et al. 2012 ("")

Phylum ""[]

  • Class "Latescibacteria"
    • ""

Phylum ""[]

  • Class "" corrig. Youssef et al. 2019
    • "Delphibacterales" (DOLZORAL124_64_63; LZORAL124-64-63)
    • "" Youssef et al. 2019 (UBP1)

Phylum "Gemmatimonadota"[]

  • Class "" (RIF5)
  • Class Gemmatimonadetes Zhang et al. 2003
    • Zhang et al. 2003
    • Pascual et al. 2016

Phylum ""[]

  • Class "Marinisomatia"
    • "" (SAR406)

Phylum "Calditrichaeota"[]

  • Class "Calditrichia" Cavalier-Smith 2020
    • Calditrichales Kublanov et al. 2020

Phylum "Bacteroidota"[]

Phylogeny of Bacteroidota[9][10][11]
"Kapabacteria"

"Kryptonia"

Ignavibacteriia

Ignavibacteriales

Chlorobia

Chlorobiales

Rhodothermia

Balneolales

Rhodothermales

Bacteroidia

Cytophagales

Chitinophagales

Sphingobacteriales

Bacteroidales

Flavobacteriales

Clade Proteobacteria[]

Phylum Nitrospirota_A[]

  • Class ""
    • ""

Phylum ""[]

  • Class "Babeliae" Yeoh et al. 2016 (TM6)
    • ""

Phylum Desulfobacterota G[]

  • Class Waite et al. 2020
    • Waite et al. 2020

Phylum SZUA-79[]

  • Class SZUA-79
    • "" corrig. Tan et al. 2019

Phylum "Thermosulfidibacteraeota"[]

  • Class "Thermosulfidibacteria"
    • "" Cavalier-Smith 2020

Phylum "Chrysiogenetota"[]

  • Class Chrysiogenetes Garrity & Holt 2002
    • Chrysiogenales Garrity & Holt 2002

Phylum "Deferribacterota"[]

  • Class Deferribacteres Huber & Stetter 2002 em. Jumas-Bilak et al. 2009
    • Deferribacterales Huber & Stetter 2002

Phylum "Aquificota"[]

Phylogeny of Aquificota[9][10][11]
"Desulfurobacteriia"

"Aquificia"

""

Aquificales

  • Class "Desulfurobacteriia"
    • Gupta & Lali 2014
  • Class "Aquificia"
    • Aquificales Reysenbach 2002 emend. Gupta & Lali 2013
    • ""

Phylum "Campylobacterota"[]

  • Class Desulfurellia
    • Desulfurellales Kuever, Rainey & Widdel 2006
  • Class "Campylobacteria"
    • Campylobacterales Garrity, Bell & Lilburn 2006
    • Nautiliales Miroshnichenko et al. 2004

Phylum "Acidobacteriota"[]

Phylogeny of Acidobacteriota[9][10][11]

Holophagales

""

Blastocatellia

Blastocatellales

Acidobacteriia

Acidobacteriales

  • Class "" (RIF25)
  • Class "" Tschoeke et al. 2020
  • Class Dedysh & Yilmaz 2018
    • Dedysh & Yilmaz 2018
  • Class
    • Fukunaga et al. 2008
    • Holophagales Fukunaga et al. 2008
    • Dedysh & Yilmaz 2018
  • Class ""
    • "" Kadnikov et al. 2019 (OP8)
  • Class Dedysh & Yilmaz 2018
    • Dedysh & Yilmaz 2018
  • Class Blastocatellia Pascual et al. 2016
  • Class Acidobacteria
    • Acidobacteriales Cavalier-Smith 2002
    • "" Epihov et al. 2021
    • Dedysh & Yilmaz 2018

Phylum "Modulibacteria"[]

  • Class "" Sekiguchi et al. 2015 (KSB3)
    • "" Sekiguchi et al. 2015

Phylum ""[]

  • Class "" Hug et al. 2016 (CSP1-6)
    • ""
  • Class ""
    • ""

Phylum ""[]

  • Class ""
    • "" Schmidt et al. 2000

Phylum "Nitrospinae"[]

  • Class "" Lucker et al. 2013
    • "" Lucker et al. 2013

Phylum "Nitrospirota"[]

  • Class "" Umezawa et al. 2021
    • "" Umezawa et al. 2021
  • Class "Nitrospiria Oren et al. 2015
    • "Nitrospirales" Garrity & Holt 2001

Phylum ""[]

  • Class "Deferrisomatia" Waite et al. 2020
    • Deferrisomatales Waite et al. 2020

Phylum "Desulfobacterota"[]

Phylogeny of Desulfobacterota[9][10][11]

Geobacterales

Desulfuromonadales

Syntrophales

Desulfomonilales

Thermodesulfobacteriales

Desulfovibrionales

""

""

Syntrophobacteria

Syntrophobacterales

Desulfobacterales

  • ?"" Murphy et al. 2021
  • ?"" Murphy et al. 2021
  • Class Waite et al. 2020
  • Class Syntrophia Waite et al. 2020
    • Syntrophales Waite et al. 2020
  • Class Desulfomonilia Waite et al. 2020
    • Desulfomonilales Waite et al. 2020
  • Class Waite et al. 2020
    • Waite et al. 2020
  • Class Hatchikian, Ollivier & Garcia 2002 em. Cavalier-Smith 2020
    • Thermodesulfobacteriales Hatchikian, Ollivier & Garcia 2002
  • Class Waite et al. 2020
    • Waite et al. 2020
  • Class Desulfovibrionia Waite et al. 2020
  • Class Waite et al. 2020
    • "" Waite et al. 2020
  • Class Waite et al. 2020
    • corrig. Kuever, Rainey & Widdel 2006
  • Class Waite et al. 2020
    • "" Waite et al. 2020
    • Waite et al. 2020
  • Class Syntrophobacteria Waite et al. 2020
  • Class Waite et al. 2020

Phylum "Bdellovibrionota"[]

Phylogeny of Bdellovibrionota[9][10][11]
Oligoflexia

Silvanigrellales

Bacteriovoracia

Bacteriovoracales

Bdellovibrionia

Bdellovibrionales

  • Class Oligoflexia Nakai et al. 2014
  • Class Bacteriovoracia Waite et al. 2020
    • Bacteriovoracales Hahn et al. 2017
  • Class Bdellovibrionia Waite et al. 2020

Phylum ""[]

  • Class "" Chuvochina et al. 2019
    • "" Chuvochina et al. 2019

Phylum "Myxococcota"[]

Phylogeny of Myxococcota[9][10][11]
""

Myxococcia

Myxococcales

  • Class ""
    • Wang et al. 2015
  • Class Waite et al. 2020
    • Waite et al. 2020
    • Tchan, Pochon & Prevot 1948
  • Class Myxococcia Waite et al. 2020
    • Myxococcales (fruiting gliding bacteria)

Phylum SAR324[]

  • Class Anantharaman et al. 2016

Phylum Proteobacteria s.s.[]

Phylogeny of Proteobacteria s.s.[9][10][11]
""

Magnetococcales

Alphaproteobacteria

cont'd

Rhodobacteriae cont'd

Caulobacteridae cont'd

Mariprofundales

Gammaproteobacteria

""

Acidithiobacillales {"Acidithiobacillidae"}

Burkholderiales {"Neisseriidae"}

"" cont'd

Phylogeny of Rickettsiidae

"" {Rickettsiales_A}

1604HC

Holosporales

Rickettsiales

Phylogeny of Rhodobacteriae

"Pelagibacterales"

Bartonellaceae {Rhizobiales_A}

Rhodobacterales

Phylogeny of Caulobacteridae

""

""

""

""

""

""

Rhodospirillales

UBA8366

Kiloniellales

""

""

""

Stellaceae

""

""

""

""

""

Minwuiales

Sneathiellales

Sphingomonadales

Micropepsales

Caulobacterales

""

Hyphomicrobiales

Phylogeny of Pseudomonadidae

Acidiferrobacterales

""

""

""

Cardiobacteriales

Halofilum

""

Thiotrichales

""

Inmirania

Thioalbus

""

Chromatiales

SZUA-21

""

""

""

""

Methylococcales

"

""

"Ca. "

""

Xanthomonadales

""

""

""

""

Enterobacteriaceae_A

""

Aquicella

""

""

Legionellales

Pseudomonadales

Enterobacterales

  • Class "" Parks et al. 2018
  • Class "" Cavalier-Smith 2020 ["Zetaproteobacteria"]
    • Mariprofundales Makita et al. 2017
  • Class Alphaproteobacteria
    • Sublass Ferla et al. 2013
      • Clade 1604HC
      • "" Castelli et al. 2019 {Rickettsiales_A}
      • Holosporales Szokoli et al. 2016
      • Rickettsiales Gieszczykiewicz 1939 emend. Dumler et al. 2001
    • Sublass Rhodobacteriae
    • Sublass Caulobacteridae Ferla et al. 2013
      • Clade UBA8366
      • ""
      • ""
      • ""
      • Caulobacterales Henrici & Johnson 1935 (Hyphomonadales; Maricaulales; Parvularculales)
      • ""
      • ""
      • ""
      • ""
      • Hyphomicrobiales Douglas 1957 (Rhizobiales)
      • Kiloniellales Wiese et al. 2009
      • Micropepsales Harbison et al. 2016
      • ""
      • Minwuiales Sun et al. 2018
      • ""
      • ""
      • ""
      • ""
      • Rhodospirillales Pfennig & Truper 1971
      • Sphingomonadales Yabuuchi & Kosako 2006 (Emcibacterales; Iodidimonadales; Kordiimonadales; Rhodothalassiales)
      • Sneathiellales Kurahashi et al. 2008
      • Stellaceae Hördt et al. 2020 {ATCC43930}
      • Jean et al. 2016 {CACIAM-22H2: CACIAM-22H2}
      • ""
      • ""
      • ""
  • Class Gammaproteobacteria

List of Candidate Phyla[]

  • ""
  • "" Rinke et al. 2013 (OctSpa1-106)
  • "" Probst et al. 2018
  • "" Tazi et al. 2006
  • "" Dojka 1998 (WS1)

See also[]

References[]

  1. ^ J.P. Euzéby. "Bacteria". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-06-27.
  2. ^ Sayers; et al. "Bacteria". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
  3. ^ All-Species Living Tree Project."16S rRNA-based LTP release 132". Silva Comprehensive Ribosomal RNA Database. Retrieved 2020-08-20.
  4. ^ Parks, DH; Chuvochina, M; Waite, DW; Rinke, C; Skarshewski, A; Chaumeil, PA; Hugenholtz, P (November 2018). "A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life". Nature Biotechnology. 36 (10): 996–1004. bioRxiv 10.1101/256800. doi:10.1038/nbt.4229. PMID 30148503. S2CID 52093100.
  5. ^ Parks, DH; Chuvochina, M; Chaumeil, PA; Rinke, C; Mussig, AJ; Hugenholtz, P (September 2020). "A complete domain-to-species taxonomy for Bacteria and Archaea". Nature Biotechnology. 38 (9): 1079–1086. bioRxiv 10.1101/771964. doi:10.1038/s41587-020-0501-8. PMID 32341564. S2CID 216560589.
  6. ^ Chaumeil, PA; Mussig, AJ; Hugenholtz, P; Parks, DH (15 November 2019). "GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database". Bioinformatics. doi:10.1093/bioinformatics/btz848. PMC 7703759. PMID 31730192.
  7. ^ Almeida, Alexandre; Nayfach, Stephen; Boland, Miguel; Strozzi, Francesco; Beracochea, Martin; Shi, Zhou Jason; Pollard, Katherine S.; Sakharova, Ekaterina; Parks, Donovan H.; Hugenholtz, Philip; Segata, Nicola; Kyrpides, Nikos C.; Finn, Robert D. (20 July 2020). "A unified catalog of 204,938 reference genomes from the human gut microbiome". Nature Biotechnology. doi:10.1038/s41587-020-0603-3. PMC 7801254. PMID 32690973.
  8. ^ Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I-Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T. B. K.; Nielsen, Torben; Kirton, Edward; Faria, José P.; Edirisinghe, Janaka N.; Henry, Christopher S.; Jungbluth, Sean P.; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam P.; Tringe, Susannah G.; Visel, Axel; Woyke, Tanja; Mouncey, Nigel J.; Ivanova, Natalia N.; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A. (9 November 2020). "A genomic catalog of Earth's microbiomes". Nature Biotechnology. doi:10.1038/s41587-020-0718-6. PMC 8041624.
  9. ^ a b c d e f g h i j k l m n o p q r s t u v w x "GTDB release 06-RS202". Genome Taxonomy Database. Retrieved 6 December 2021.
  10. ^ a b c d e f g h i j k l m n o p q r s t u v w x "ar122_r202.sp_label". Genome Taxonomy Database. Retrieved 6 December 2021.
  11. ^ a b c d e f g h i j k l m n o p q r s t u v w x "Taxon History". Genome Taxonomy Database. Retrieved 6 December 2021.
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