Nitrospirota

Nitrospirota
Scientific classification
Domain:	Bacteria
Phylum:	Nitrospirota; Garrity & Holt 2021
Class & Order
	"" ""; ; Nitrospiria "Nitrospirales"; ; "" ""; ;
Synonyms
	"Nitrospirae" Garrity and Holt 2001; "Nitrospiraeota" Oren et al. 2015; "Nitrospirota" Whitman et al. 2018;

Nitrospirota is a phylum of bacteria. It includes multiple genera, such as Nitrospira, the largest. The first member of this phylum, , was discovered in 1985.^[2] The second member, Nitrospira moscoviensis, was discovered in 1995.^[3]^[4]

Nitrospirota contains nitrifying taxa which oxidize nitrite to nitrate (nitrite-oxidizing bacteria, NOB^[5]) and commamox bacteria Nitrospira inopinata discovered in 2015^[6]^[7] and cultivated in 2017.^[8]

Phylogeny[]

16S rRNA-based LTP release 132 by The All-Species Living Tree Project^[9]

Annotree v1.2.0^[10]^[11] which uses the GTDB 05-RS95 (Genome Taxonomy Database)^[12]^[13]

	L. ferriphilum

	L. ferrooxidans

"Thermodesulfovibrionia"

"Ca. "

"Ca. "

""

L. ferrooxidans

	""

	L. ferriphilum

Nitrospiria

"Ca. "

Nitrospira

""

""

""

N. moscoviensis

"Ca. N. inopinata"

	"Ca. "

	"Ca. "

Taxonomy[]

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LSPN)^[14] and the National Center for Biotechnology Information (NCBI).^[4]

Phylum "Nitrospirota" Garrity & Holt 2021
- Genus "Candidatus " corrig. Kostanjsek et al. 2013
  - Species "Ca. " corrig. Kostanjsek et al. 2013
- Class ""
  - Order ""
    - Family "" Cavalier-Smith 2020
      - Genus Markosyan 1972 ex Hippe 2000
        Species "" Tyson et al. 2005
        
        Species L. ferriphilum Coram & Rawlings 2002
        
        Species L. ferrooxidans Markosyan 1972 ex Hippe 2000
        
        Species "" Aliaga Goltsman et al. 2009
        
        Species Hippe 2000
- Class Nitrospiria Oren et al. 2015
  - Genus "Candidatus " Yu & Leadbetter 2020
    - Species "Ca. " Yu & Leadbetter 2020
  - Order "Nitrospirales" Garrity & Holt 2001
    - Family "Nitrospiraceae" Garrity & Holt 2001
      - Genus Nitrospira Watson et al. 1986
        Species "Ca. " Daebeler et al. 2020
        
        Species "Ca. " Lebedeva et al. 2008
        
        Species "Ca. N. inopinata" Daims et al. 2015
        
        Species "Ca. " Sakoula et al. 2021
        
        Species "Ca. " van Kessel et al. 2015
        
        Species "Ca. " van Kessel et al. 2015
        
        Species "Ca. " Haaijer et al. 2013
        
        Species Lebedeva et al. 2011
        
        Species Nowka et al. 2015
        
        Species Ushiki et al. 2013
        
        Species Nowka et al. 2015
        
        Species Watson et al. 1986 (type sp.)
        
        Species N. moscoviensis Ehrich et al. 1995
- Class Umezawa et al. 2021
  - Order "" Umezawa et al. 2021
    - Genus "Candidatus " Zecchin et al. 2018
      - Species "Ca. " Zecchin et al. 2018
    - Family "" Umezawa et al. 2021
      - Genus "" Umezawa et al. 2021
        Species "" Umezawa et al. 2021
    - Family ""
      - Genus "Candidatus " Spring et al. 1993
        Species "Ca. M. bavaricum" Spring et al. 1993
        
        Species "Ca. " Lin et al. 2014
      - Genus "Candidatus " Lefevre et al. 2011
        Species "Ca. " Lefevre et al. 2011
        
        Species "Ca. " Kolinko 2014
    - Family "" Umezawa et al. 2021
      - Genus Henry et al. 1994 emend. Sekiguchi et al. 2008
        Species Sekiguchi et al. 2008
        
        Species Haouari et al. 2009
        
        Species Sonne-Hansen and Ahring 2000
        
        Species Sekiguchi et al. 2008
        
        Species Henry et al. 1994 (type sp.)

References[]

^ Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi:10.1099/ijsem.0.005056. PMID 34694987.
^ Watson SW, Bock E, Valois FW, Waterbury JB, Schlosser U (1986). "Nitrospira marina gen. nov. sp. nov.: a chemolithotrophic nitrite-oxidizing bacterium". Arch Microbiol. 144 (1): 1–7. doi:10.1007/BF00454947. S2CID 29796511.
^ Ehrich S, Behrens D, Lebedeva E, Ludwig W, Bock E (July 1995). "A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and its phylogenetic relationship". Archives of Microbiology. 164 (1): 16–23. doi:10.1007/BF02568729. PMID 7646315. S2CID 2702110.
^ ^a ^b Sayers. "Nitrospirae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2016-03-20.
^ Daims H, Nielsen JL, Nielsen PH, Schleifer KH, Wagner M (November 2001). "In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants". Applied and Environmental Microbiology. 67 (11): 5273–84. doi:10.1128/AEM.67.11.5273-5284.2001. PMC 93301. PMID 11679356.
^ Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M, et al. (December 2015). "Complete nitrification by Nitrospira bacteria". Nature. 528 (7583): 504–9. Bibcode:2015Natur.528..504D. doi:10.1038/nature16461. PMC 5152751. PMID 26610024.
^ van Kessel MA, Speth DR, Albertsen M, Nielsen PH, Op den Camp HJ, Kartal B, et al. (December 2015). "Complete nitrification by a single microorganism". Nature. 528 (7583): 555–9. Bibcode:2015Natur.528..555V. doi:10.1038/nature16459. PMC 4878690. PMID 26610025.
^ Kits KD, Sedlacek CJ, Lebedeva EV, Han P, Bulaev A, Pjevac P, et al. (September 2017). "Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle". Nature. 549 (7671): 269–272. Bibcode:2017Natur.549..269K. doi:10.1038/nature23679. PMC 5600814. PMID 28847001.
^ All-Species Living Tree Project."16S rRNA-based LTP release 132". Silva Comprehensive Ribosomal RNA Database. Retrieved 2015-08-20.
^ "AnnoTree v1.2.0". AnnoTree.
^ Mendler, K; Chen, H; Parks, DH; Hug, LA; Doxey, AC (2019). "AnnoTree: visualization and exploration of a functionally annotated microbial tree of life". Nucleic Acids Research. 47 (9): 4442–4448. doi:10.1093/nar/gkz246. PMC 6511854. PMID 31081040.
^ "GTDB release 05-RS95". Genome Taxonomy Database.
^ Parks, DH; Chuvochina, M; Chaumeil, PA; Rinke, C; Mussig, AJ; Hugenholtz, P (September 2020). "A complete domain-to-species taxonomy for Bacteria and Archaea". Nature Biotechnology. 38 (9): 1079–1086. bioRxiv 10.1101/771964. doi:10.1038/s41587-020-0501-8. PMID 32341564. S2CID 216560589.
^ Euzéby JP. ""Nitrospirae"". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2016-03-20.

External links[]

"Leptospirillum sp".

This bacteria-related article is a stub. You can help Wikipedia by .

[1] Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi:10.1099/ijsem.0.005056. PMID 34694987.

[2] Watson SW, Bock E, Valois FW, Waterbury JB, Schlosser U (1986). "Nitrospira marina gen. nov. sp. nov.: a chemolithotrophic nitrite-oxidizing bacterium". Arch Microbiol. 144 (1): 1–7. doi:10.1007/BF00454947. S2CID 29796511.

[3] Ehrich S, Behrens D, Lebedeva E, Ludwig W, Bock E (July 1995). "A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and its phylogenetic relationship". Archives of Microbiology. 164 (1): 16–23. doi:10.1007/BF02568729. PMID 7646315. S2CID 2702110.

[NCBI-4] Sayers. "Nitrospirae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2016-03-20.

[5] Daims H, Nielsen JL, Nielsen PH, Schleifer KH, Wagner M (November 2001). "In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants". Applied and Environmental Microbiology. 67 (11): 5273–84. doi:10.1128/AEM.67.11.5273-5284.2001. PMC 93301. PMID 11679356.

[6] Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M, et al. (December 2015). "Complete nitrification by Nitrospira bacteria". Nature. 528 (7583): 504–9. Bibcode:2015Natur.528..504D. doi:10.1038/nature16461. PMC 5152751. PMID 26610024.

[7] van Kessel MA, Speth DR, Albertsen M, Nielsen PH, Op den Camp HJ, Kartal B, et al. (December 2015). "Complete nitrification by a single microorganism". Nature. 528 (7583): 555–9. Bibcode:2015Natur.528..555V. doi:10.1038/nature16459. PMC 4878690. PMID 26610025.

[8] Kits KD, Sedlacek CJ, Lebedeva EV, Han P, Bulaev A, Pjevac P, et al. (September 2017). "Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle". Nature. 549 (7671): 269–272. Bibcode:2017Natur.549..269K. doi:10.1038/nature23679. PMC 5600814. PMID 28847001.

[9] All-Species Living Tree Project."16S rRNA-based LTP release 132". Silva Comprehensive Ribosomal RNA Database. Retrieved 2015-08-20.

[10] "AnnoTree v1.2.0". AnnoTree.

[11] Mendler, K; Chen, H; Parks, DH; Hug, LA; Doxey, AC (2019). "AnnoTree: visualization and exploration of a functionally annotated microbial tree of life". Nucleic Acids Research. 47 (9): 4442–4448. doi:10.1093/nar/gkz246. PMC 6511854. PMID 31081040.

[12] "GTDB release 05-RS95". Genome Taxonomy Database.

[13] Parks, DH; Chuvochina, M; Chaumeil, PA; Rinke, C; Mussig, AJ; Hugenholtz, P (September 2020). "A complete domain-to-species taxonomy for Bacteria and Archaea". Nature Biotechnology. 38 (9): 1079–1086. bioRxiv 10.1101/771964. doi:10.1038/s41587-020-0501-8. PMID 32341564. S2CID 216560589.

[14] Euzéby JP. ""Nitrospirae"". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2016-03-20.

[1]

[2]

[3]

[4]

[5]

[6]

[7]

[8]

[9]

[10]

[11]

[12]

[13]

[14]

Nitrospirota

Contents

Phylogeny[]

Taxonomy[]

See also[]

References[]

Further reading[]

External links[]