List of restriction enzyme cutting sites: Ba–Bc

From Wikipedia, the free encyclopedia
Main articles: List of restriction enzyme cutting sites and Restriction enzyme
Legend of nucleobases
Code Nucleotide represented
A Adenine (A)
C Cytosine (C)
G Guanine (G)
T Thymine (T)
N A, C, G or T
M A or C
R A or G
W A or T
Y C or T
S C or G
K G or T
H A, C or T
B C, G or T
V A, C or G
D A, G or T


This article contains a list of the most studied restriction enzymes whose names start with Ba to Bc inclusive. It contains approximately 120 enzymes.

The following information is given:

  • Enzyme: Accepted name of the molecule, according to the internationally adopted nomenclature[1][2], and bibliographical references. (Further reading: see the section "Nomenclature" in the article "Restriction enzyme".)
  • PDB code: Code used to identify the structure of a protein in the PDB database of protein structures. The 3D atomic structure of a protein provides highly valuable information to understand the intimate details of its mechanism of action[3][4].
  • Source: Organism that naturally produces the enzyme.
  • Recognition sequence: Sequence of DNA recognized by the enzyme and to which it specifically binds.
  • Cut: Cutting site and DNA products of the cut. The recognition sequence and the cutting site usually match, but sometimes the cutting site can be dozens of nucleotides away from the recognition site[5][6].
  • Isoschizomers and neoschizomers: An isoschizomer is an enzyme that recognizes the same sequence as another. A neoschizomer is a special type of isoschizomer that recognizes the same sequence as another, but cuts in a different manner. A maximum number of 8-10 most common isoschizomers are indicated for every enzyme but there may be many more. Neoschizomers are shown in bold and green color font (e.g.: BamHI). When "None on date" is indicated, that means that there were no registered isoschizomers in the databases on that date with a clearly defined cutting site. Isoschizomers indicated in white font and grey background correspond to enzymes not listed in the current lists:
as in this not listed enzyme:  EcoR70I 


Whole list navigation[]

Restriction enzymes[]

Ba - Bc[]

Enzyme PDB code Source Recognition sequence Cut Isoschizomers
Bacillus alcalophilus 36 5' GGNCC
3' CCNGG 		5' ---G   GNCC--- 3'
3' ---CCNG   G--- 5' 		AspS9I, AvcI, BavAII, Bce22I, Bsp1894I, Bsu54I, FmuI, NspIV
[7] Bacillus sphaericus 5' ACN4GTAYC
3' TGN4CATYG 		5' ---ACN4GTAYCN6NNNNNN   --- 3'
3' ---TGN4CATYGN6N   NNNNN--- 5' 		 — None on May 2010 —
[8][9] 5' TGGCCA
3' ACCGGT 		5' ---TGG   CCA--- 3'
3' ---ACC   GGT--- 5'
Bacillus alcalophilus 228 5' GGNCC
3' CCNGG 		5' ---G   GNCC--- 3'
3' ---CCNG   G--- 5' 		AspS9I, AvcI, BavAII, BshKI, Bsp1894I, Bsu54I, FmuI, NspIV
BamHI[10][11][12][13][14][15][16][17][18][19][20]

[21][22][23][24][25][26][27][28][29][30] 		1BAM Bacillus amyloliquefaciens H 5' GGATCC
3' CCTAGG 		5' ---G   GATCC--- 3'
3' ---CCTAG   G--- 5' 		AccEBI, AliI, ApaCI, AsiI, Bce751I, Bsp98I, Bsp4009I, BspAAIII, CelI, Nsp29132II, NspSAIV, SolI, SurI
Bacillus amyloliquefaciens N 5' GGWCC
3' CCWGG 		5' ---G   GWCC--- 3'
3' ---CCWG   G--- 5' 		BcuAI, BsrAI, CauI, EagMI, FdiI, HgiCII, HgiJI, SinI
[31][32] 5' GGYRCC
3' CCRYGG 		5' ---G   GYRCC--- 3'
3' ---CCRYG   G--- 5' 		AccB1I, BbvBI, BspT107I, Eco64I, HgiCI, HgiHI, MspB4I, PfaAI
[12][31] 5' GRGCYC
3' CYCGRG 		5' ---GRGCY   C--- 3'
3' ---C   YCGRG--- 5'
[31] 5' ATCGAT
3' TAGCTA 		5' ---AT   CGAT--- 3'
3' ---TAGC   TA--- 5' 		AagI, BavCI, Bsa29I, BseCI, BspDI, Bsu15I, BsuTUI, ClaI
Bacillus anthracis 5' GGCC
3' CCGG 		5' ---GG   CC--- 3'
3' ---CC   GG--- 5'
Bacillus sp. 5' CCAN5TGG
3' GGTN5ACC 		5' ---CCANNNN   NTGG--- 3'
3' ---GGTN   NNNNACC--- 5' 		AccB7I, AcpII, Asp10HII, Esp1396I, PflBI, PflMI, Van91I
5' CACGAG
3' GTGCTC 		5' ---C   ACGAG--- 3'
3' ---GTGCT   C--- 5'
Bacillus alvei 5' CAGCTG
3' GTCGAC 		5' ---CAG   CTG--- 3'
3' ---GTC   GAC--- 5'
Bacillus alvei A 5' CAGCTG
3' GTCGAC 		5' ---CAG   CTG--- 3'
3' ---GTC   GAC--- 5'
Bacillus alvei A 5' GGNCC
3' CCNGG 		5' ---G   GNCC--- 3'
3' ---CCNG   G--- 5' 		AspS9I, AvcI, BavBII, BshKI, Bsp1894I, Bsu54I, FmuI, NspIV
Bacillus alvei B 5' CAGCTG
3' GTCGAC 		5' ---CAG   CTG--- 3'
3' ---GTC   GAC--- 5'
Bacillus alvei B 5' GGNCC
3' CCNGG 		5' ---G   GNCC--- 3'
3' ---CCNG   G--- 5' 		AspS9I, Bac36I, BavAII, BshKI, BspBII, Bsu54I, FmuI, Pde12I
Bacillus alvei C 5' ATCGAT
3' TAGCTA 		5' ---AT   CGAT--- 3'
3' ---TAGC   TA--- 5' 		AagI, BanIII, Bsa29I, BseCI, BspDI, Bsu15I, BsuTUI, ClaI
[33] Bifidobacterium breve YIT4006 5' GGCGCC
3' CCGCGG 		5' ---GGCGC   C--- 3'
3' ---C   CGCGG--- 5'
Bifidobacterium bifidum YIT4007 5' GRCGYC
3' CYGCRG 		5' ---GR   CGYC--- 3'
3' ---CYGC   RG--- 5' 		AcyI, AhaII, BbiII, HgiHII, Hin1I, Hsp92I, Msp17I, PamII
Bifidobacterium bifidum S-24 5' ACGCGT
3' TGCGCA 		5' ---A   CGCGT--- 3'
3' ---TGCGC   A--- 5'
Bordetella bronchiseptica 4994 5' AAGCTT
3' TTCGAA 		5' ---A   AGCTT--- 3'
3' ---TTCGA   A--- 5'
Bacillus brevis 7 5' GAAGAC
3' CTTCTG 		5' ---GAAGACN6N   NNNNN--- 3'
3' ---CTTCTGN6NNNNNN   --- 5'
[34][35] Bacillus brevis 5' CACGTG
3' GTGCAC 		5' ---CAC   GTG--- 3'
3' ---GTG   CAC--- 5' 		AcvI, BcoAI, Eco72I, PmaCI, PmlI, PspCI
[36] 5' GAAGAC
3' CTTCTG 		5' ---GAAGACNN   NNNN--- 3'
3' ---CTTCTGNNNNNN   --- 5'
[37] Bacillus circulans 5' GCATGC
3' CGTACG 		5' ---GCATG   C--- 3'
3' ---C   GTACG--- 5'
[38][39] Bacillus brevis 5' GCAGC
3' CGTCG 		5' ---GCAGCN7N   NNNN--- 3'
3' ---CGTCGN7NNNNN   --- 5' 		AlwXI, BseKI, BseXI, Bsp423I, Bst12I, Bst71I, BstV1I
[40] Bacillus brevis 80 5' GAAGAC
3' CTTCTG 		5' ---GAAGACNN   NNNN--- 3'
3' ---CTTCTGNNNNNN   --- 5'
[41] Bacillus brevis 12 5' GWGCWC
3' CWCGWG 		5' ---GWGCW   C--- 3'
3' ---C   WCGWG--- 5'
Alw21I, AspHI, Bsh45I, BsiHKAI,
HgiAI,  HpyF46II,  MspV281I
Bacillus brevis 16 5' GAAGAC
3' CTTCTG 		5' ---GAAGACNN   NNNN--- 3'
3' ---CTTCTGNNNNNN   --- 5'
Bacillus brevis A 5' GAAN4TTC
3' CTTN4AAG 		5' ---GAANN   NNTTC--- 3'
3' ---CTTNN   NNAAG--- 5' 		Asp700I, MroXI, PdmI, XmnI
Bacillus brevis A 5' ATCGAT
3' TAGCTA 		5' ---AT   CGAT--- 3'
3' ---TAGC   TA--- 5' 		BavCI, Bci29I, Bli86I, BseCI, BspZEI, Bsu15I, ClaI, Rme21I
Bacillus brevis A 5' TCCGGA
3' AGGCCT 		5' ---T   CCGGA--- 3'
3' ---AGGCC   T--- 5' 		AccIII, Aor13HI, BlfI, BseAI, Bsp13I, BspEI, Bsu23I, Kpn2I
Bacillus brevis B 5' GGYRCC
3' CCRYGG 		5' ---G   GYRCC--- 3'
3' ---CCRYG   G--- 5' 		BanI, BshNI, BspT107I, Eco64I, HgiCI, HgiHI, MspB4I, PfaAI
[42] Bacillus brevis 5' CCTCAGC
3' GGAGTCG 		5' ---CC   TCAGC--- 3'
3' ---GGAGT   CG--- 5' 		AbeI
5' WCCGGW
3' WGGCCW 		5' ---W   CCGGW--- 3'
3' ---WGGCC   W--- 5'
Bacteroides caccae 5' CCATC
3' GGTAG 		5' ---CCATCNNNN   N--- 3'
3' ---GGTAGNNNNN   --- 5'
Bacillus cereus B4 5' GCN7GC
3' CGN7CG 		5' ---GCNNNNN   NNGC--- 3'
3' ---CGNN   NNNNNCG--- 5'
Bacillus cereus 22 5' GGNCC
3' CCNGG 		5' ---G   GNCC--- 3'
3' ---CCNG   G--- 5' 		AspS9I, Bac36I, BavAII, BshKI, BspBII, CcuI, FmuI, Pde12I
[43] Bacillus cereus 83 5' CTTGAG
3' GAACTC 		5' ---CTTGAGN13NNN   --- 3'
3' ---GAACTCN13N   NN--- 5'
Bacillus cereus 5' GATC
3' CTAG 		5' ---   GATC--- 3'
3' ---CTAG   --- 5' 		Bfi57I, Bsp143I, BspJI, BstMBI, CviAI, Kzo9I, NdeII, Sth368I
Bacillus cereus 751 5' GGATCC
3' CCTAGG 		5' ---G   GATCC--- 3'
3' ---CCTAG   G--- 5' 		BamHI, Bce751I, BnaI, Bsp98I, Bsp4009I, BstI, NspSAIV, Pfl8I
Bacillus cereus 1315 5' ACGGC
3' TGCCG 		5' ---ACGGCN11N   NN--- 3'
3' ---TGCCGN11NNN   --- 5'
Bacillus cereus 1323 5' CGCG
3' GCGC 		5' ---CG   CG--- 3'
3' ---GC   GC--- 5' 		AccII, Bsh1236I, BtkI, Csp68KVI, FalII, FauBII, FnuDII, SelI, ThaI
Bacillus cereus 1195 5' GCN7GC
3' CGN7CG 		5' ---GCNNNNN   NNGC--- 3'
3' ---CGNN   NNNNNCG--- 5'
[44] 5' ACGGC
3' TGCCG 		5' ---ACGGCN10NN   N--- 3'
3' ---TGCCGN10NNN   --- 5'
[45][46] Bacillus coagulans 5' CGAN6TGC
3' GCTN6ACG 		5' ---CGAN6TGCN9NNN   --- 3'
3' ---GCTN6ACGN9N   NN--- 5'
Bacillus circulans 29 5' ATCGAT
3' TAGCTA 		5' ---AT   CGAT--- 3'
3' ---TAGC   TA--- 5' 		BavCI, BciBI, Bli86I, BseCI, BspZEI, Bsu15I, ClaI, Rme21I
Bacillus circulans B 5' ATCGAT
3' TAGCTA 		5' ---AT   CGAT--- 3'
3' ---TAGC   TA--- 5' 		BavCI, BcmI, Bli86I, BseCI, BspZEI, Bsu15I, ClaI, Rme21I
Bacillus circulans B 5' CCWGG
3' GGWCC 		5' ---CC   WGG--- 3'
3' ---GGW   CC--- 5' 		AjnI, ApyI, BptI, Bst1I, BstOI, BstM6I, Bst2UI, EcoRII, MvaI
[47] Bacillus circulans 5' GTATCC
3' CATAGG 		5' ---GTATCCN4NN   --- 3'
3' ---CATAGGN4N   N--- 5' 		BfuI
[15][48][49] 5' TGATCA
3' ACTAGT 		5' ---T   GATCA--- 3'
3' ---ACTAG   T--- 5'
AbaI, BsiQI, BspXII,
BstT7I, FbaI, Ksp22I,  ParI 
Bacillus sp. 5' ATCGAT
3' TAGCTA 		5' ---AT   CGAT--- 3'
3' ---TAGC   TA--- 5' 		BsuTUI, Bsu15I, BavCI, Bli86I, BspZEI, Rme21I, BseCI, BdiI
[50][51][52] 2ODH 5' CCSGG
3' GGSCC 		5' ---CC   SGG--- 3'
3' ---GGS   CC--- 5'
AhaI, AseII, AsuC2I, BpuMI, CauII,
Eco1831I, HgiS22I,Kpn49kII, NciI
[53] Bacillus coagulans SM 1 5' CYCGRG
3' GRGCYC 		5' ---C   YCGRG--- 3'
3' ---GRGCY   C--- 5' 		Ama87I, AquI, BsoBI, BstSI, Eco88I, NspSAI, OfoI, PunAI
Bacillus coagulans 5 5' CTCTTC
3' GAGAAG 		5' ---CTCTTCN   NNN--- 3'
3' ---GAGAAGNNNN   --- 5'
Bacillus coagulans 27 5' CCGG
3' GGCC 		5' ---C   CGG--- 3'
3' ---GGC   C--- 5'
Bacillus coagulans 116 5' CTCTTC
3' GAGAAG 		5' ---CTCTTCN   NNN--- 3'
3' ---GAGAAGNNNN   --- 5'
Bacillus coagulans 118 5' RCCGGY
3' YGGCCR 		5' ---R   CCGGY--- 3'
3' ---YGGCC   R--- 5'
Bacillus coagulans AUCM B-732 5' CACGTG
3' GTGCAC 		5' ---CAC   GTG--- 3'
3' ---GTG   CAC--- 5' 		AcvI, BbrPI, Eco72I, PmaCI, PmlI, PspCI
Bacillus coagulans 5' CTCTTC
3' GAGAAG 		5' ---CTCTTCN   NNN--- 3'
3' ---GAGAAGNNNN   --- 5'
Bacillus coagulans Vs 29-022 5' ACTAGT
3' TGATCA 		5' ---A   CTAGT--- 3'
3' ---TGATC   A--- 5' 		AhII, AclNI, SpeI
Bacillus cereus BKM B-814 5' GGWCC
3' CCWGG 		5' ---G   GWCC--- 3'
3' ---CCWG   G--- 5' 		BamNxI, BsrAI, Csp68KI, EagMI, FssI, HgiCII, HgiJI, SinI

Notes[]

  1. ^ Smith HO, Nathans D (December 1973). "Letter: A suggested nomenclature for bacterial host modification and restriction systems and their enzymes". J. Mol. Biol. 81 (3): 419–23. doi:10.1016/0022-2836(73)90152-6. PMID 4588280.
  2. ^ Roberts RJ, Belfort M, Bestor T, Bhagwat AS, Bickle TA, Bitinaite J, Blumenthal RM, Degtyarev SK, Dryden DT, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, Heitman J, Hornby DP, Janulaitis A, Jeltsch A, Josephsen J, Kiss A, Klaenhammer TR, Kobayashi I, Kong H, Krüger DH, Lacks S, Marinus MG, Miyahara M, Morgan RD, Murray NE, Nagaraja V, Piekarowicz A, Pingoud A, Raleigh E, Rao DN, Reich N, Repin VE, Selker EU, Shaw PC, Stein DC, Stoddard BL, Szybalski W, Trautner TA, Van Etten JL, Vitor JM, Wilson GG, Xu SY (April 2003). "A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes". Nucleic Acids Res. 31 (7): 1805–12. doi:10.1093/nar/gkg274. PMC 152790. PMID 12654995.
  3. ^ Jeremy MB, John LT, Lubert S (2002). "3. Protein Structure and Function". Biochemistry. San Francisco: W. H. Freeman. ISBN 0-7167-4684-0.
  4. ^ Anfinsen C.B. (1973). "Principles that Govern the Folding of Protein Chains". Science. 181 (4096): 223–30. doi:10.1126/science.181.4096.223. PMID 4124164.
  5. ^ Kessler C, Manta V (August 1990). "Specificity of restriction endonucleases and DNA modification methyltransferases a review (Edition 3)". Gene. 92 (1–2): 1–248. doi:10.1016/0378-1119(90)90486-B. PMID 2172084.
  6. ^ Pingoud A, Jeltsch A (September 2001). "Structure and function of type II restriction endonucleases". Nucleic Acids Res. 29 (18): 3705–27. doi:10.1093/nar/29.18.3705. PMC 55916. PMID 11557805.
  7. ^ Sears LE, Zhou B, Aliotta JM, Morgan RD, Kong H (September 1996). "BaeI, another unusual BcgI-like restriction endonuclease". Nucleic Acids Res. 24 (18): 3590–2. doi:10.1093/nar/24.18.3590. PMC 146138. PMID 8836187.
  8. ^ Ueno H, Kato I, Ishino Y (June 1996). "Cloning and expression of the BalI restriction-modification system". Nucleic Acids Res. 24 (12): 2268–70. doi:10.1093/nar/24.12.2268. PMC 145948. PMID 8710495.
  9. ^ Gelinas RE, Myers PA, Weiss GH, Roberts RJ, Murray K (August 1977). "A specific endonuclease from Brevibacterium albidum". J Mol Biol. 114 (3): 433–40. doi:10.1016/0022-2836(77)90260-1. PMID 909093.
  10. ^ Wei H, Therrien C, Blanchard A, Guan S, Zhu Z (May 2008). "The Fidelity Index provides a systematic quantitation of star activity of DNA restriction endonucleases". Nucleic Acids Res. 36 (9): e50. doi:10.1093/nar/gkn182. PMC 2396408. PMID 18413342.
  11. ^ Nishigaki K, Kaneko Y, Wakuda H, Husimi Y, Tanaka T (August 1985). "Type II restriction endonucleases cleave single-stranded DNAs in general". Nucleic Acids Res. 13 (16): 5747–60. doi:10.1093/nar/13.16.5747. PMC 321909. PMID 2994012.
  12. ^ a b Nelson M, Christ C, Schildkraut I (July 1984). "Alteration of apparent restriction endonuclease recognition specificities by DNA methylases". Nucleic Acids Res. 12 (13): 5165–73. doi:10.1093/nar/12.13.5165. PMC 318911. PMID 6087274.
  13. ^ Nelson PS, Papas TS, Schweinfest CW (February 1993). "Restriction endonuclease cleavage of 5-methyl-deoxycytosine hemimethylated DNA at high enzyme-to-substrate ratios". Nucleic Acids Res. 21 (3): 681–6. doi:10.1093/nar/21.3.681. PMC 309169. PMID 8441677.
  14. ^ Greene PJ, Heyneker HL, Bolivar F, Rodriguez RL, Betlach MC, Covarrubias AA, Backman K, Russel DJ, Tait R, Boyer HW (July 1978). "A general method for the purification of restriction enzymes". Nucleic Acids Res. 5 (7): 2373–80. doi:10.1093/nar/5.7.2373. PMC 342170. PMID 673857.
  15. ^ a b Huang LH, Farnet CM, Ehrlich KC, Ehrlich M (March 1982). "Digestion of highly modified bacteriophage DNA by restriction endonucleases". Nucleic Acids Res. 10 (5): 1579–91. doi:10.1093/nar/10.5.1579. PMC 320551. PMID 6280151.
  16. ^ Wilson GA, Young FE (September 1975). "Isolation of a sequence-specific endonuclease (BamI) from Bacillus amyloliquefaciens H". J Mol Biol. 97 (1): 123–5. doi:10.1016/S0022-2836(75)80028-3. PMID 1177312.
  17. ^ Roberts RJ, Wilson GA, Young FE (January 1977). "Recognition sequence of specific endonuclease BamH.I from Bacillus amyloliquefaciens H". Nature. 265 (5589): 82–4. Bibcode:1977Natur.265...82R. doi:10.1038/265082a0. PMID 834250. S2CID 4282096.
  18. ^ Brooks JE, Benner JS, Heiter DF, Silber KR, Sznyter LA, Jager-Quinton T, Moran LS, Slatko BE, Wilson GG, Nwankwo DO (February 1989). "Cloning the BamHI restriction modification system". Nucleic Acids Res. 17 (3): 979–97. doi:10.1093/nar/17.3.979. PMC 331717. PMID 2537955.
  19. ^ Viadiu H, Aggarwal AK (May 2000). "Structure of BamHI bound to nonspecific DNA: a model for DNA sliding". Mol. Cell. 5 (5): 889–95. doi:10.1016/S1097-2765(00)80329-9. PMID 10882125.
  20. ^ George J, Chirikjian JG (April 1982). "Sequence-specific endonuclease BamHI: relaxation of sequence recognition". Proc Natl Acad Sci USA. 79 (8): 2432–6. Bibcode:1982PNAS...79.2432G. doi:10.1073/pnas.79.8.2432. PMC 346212. PMID 6283522.
  21. ^ Mukhopadhyay P, Roy KB (1984). "Sequence-specific BamHI methylase. Purification and characterization". The Journal of Biological Chemistry. 259 (16): 10357–62. doi:10.1016/S0021-9258(18)90972-5. PMID 6469968.
  22. ^ Robinson CR, Sligar SG (April 1995). "Heterogeneity in molecular recognition by restriction endonucleases: osmotic and hydrostatic pressure effects on BamHI, Pvu II, and EcoRV specificity". Proc Natl Acad Sci USA. 92 (8): 3444–8. Bibcode:1995PNAS...92.3444R. doi:10.1073/pnas.92.8.3444. PMC 42183. PMID 7724581.
  23. ^ Viadiu H, Aggarwal AK (October 1998). "The role of metals in catalysis by the restriction endonuclease BamHI". Nat Struct Biol. 5 (10): 910–6. doi:10.1038/2352. PMID 9783752. S2CID 25062657.
  24. ^ Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK (August 1995). "Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding". Science. 269 (5224): 656–63. Bibcode:1995Sci...269..656N. doi:10.1126/science.7624794. PMID 7624794.
  25. ^ Roy KB, Vrushank D (July 1995). "Bam HI cleaves the self complementary dodecamer d-CGCGGAGCCGCG, before the two G's and possibly binds in the DNA major groove". Biochem Mol Biol Int. 36 (4): 759–70. PMID 8528138.
  26. ^ Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK (May 1994). "Structure of restriction endonuclease bamhi phased at 1.95 A resolution by MAD analysis". Structure. 2 (5): 439–52. doi:10.1016/S0969-2126(00)00045-9. PMID 8081758.
  27. ^ Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK (April 1994). "Structure of restriction endonuclease BamHI and its relationship to EcoRI". Nature. 368 (6472): 660–4. Bibcode:1994Natur.368..660N. doi:10.1038/368660a0. PMID 8145855. S2CID 2999008.
  28. ^ Roy KB, Vrushank D, Jayaram B (July 1994). "Use of isotope-dilution phenomenon to advantage in the determination of kinetic constants Km and Kcat for BamHI restriction endonuclease: an empirical and iterative approach". Anal Biochem. 220 (1): 160–4. doi:10.1006/abio.1994.1313. PMID 7978240.
  29. ^ Brooks JE, Nathan PD, Landry D, Sznyter LA, Waite-Rees P, Ives CL, Moran LS, Slatko BE, Benner JS (February 1991). "Characterization of the cloned BamHI restriction modification system: its nucleotide sequence, properties of the methylase, and expression in heterologous hosts". Nucleic Acids Res. 19 (4): 841–50. doi:10.1093/nar/19.4.841. PMC 333720. PMID 1901989.
  30. ^ Mukhopadhyay P, Roy KB (October 1998). "Protein engineering of BamHI restriction endonuclease: replacement of Cys54 by Ala enhances catalytic activity". Protein Eng. 11 (10): 931–5. doi:10.1093/protein/11.10.931. PMID 9862213.
  31. ^ a b c Sugisaki H, Maekawa Y, Kanazawa S, Takanami M (October 1982). "New restriction endonucleases from Acetobacter aceti and Bacillus aneurinolyticus". Nucleic Acids Res. 10 (19): 5747–52. doi:10.1093/nar/10.19.5747. PMC 320926. PMID 6292849.
  32. ^ Schildkraut I, Lynch J, Morgan R (July 1987). "The cleavage site for the restriction endonucleases BanI and HgiC I is 5' ...G decreases GPyPuCC ...3'". Schildkraut I, Lynch J, Morgan R. 15 (13): 5492. doi:10.1093/nar/15.13.5492. PMC 305987. PMID 3037499.
  33. ^ Khosaka T, Sakurai T, Takahashi H, Saito H (February 1982). "A new site-specific endonuclease Bbei from Bifidobacterium breve". Gene. 17 (2): 117–22. doi:10.1016/0378-1119(82)90063-4. PMID 6282709.
  34. ^ Vesely Z, Schmitz GG, Jarsch M, Kessler C (June 1990). "BbrPI, a novel PmacI isoschizomer from Bacillus brevis recognizing 5'-CAC/GTG-3'". Nucleic Acids Res. 18 (11): 3423. doi:10.1093/nar/18.11.3423. PMC 330975. PMID 2162525.
  35. ^ Kafri T, Hershko A, Razin A (June 1993). "Probing CpG methylation at CACGTG with BbrPI restriction enzyme". Nucleic Acids Res. 21 (12): 2950. doi:10.1093/nar/21.12.2950. PMC 309701. PMID 8332512.
  36. ^ Protozanova E, Demidov VV, Nielsen PE, Frank-Kamenetskii MD (July 2003). "Pseudocomplementary PNAs as selective modifiers of protein activity on duplex DNA: the case of type IIs restriction enzymes". Nucleic Acids Res. 31 (14): 3929–35. doi:10.1093/nar/gkg450. PMC 165965. PMID 12853608.
  37. ^ Aubert E, Spurgeon S, Ray W, Davies J (October 1990). "Purification and characterization of an isoschizomer of SphI from Bacillus circulans". Nucleic Acids Res. 18 (20): 6152. doi:10.1093/nar/18.20.6152. PMC 332440. PMID 2146591.
  38. ^ Gingeras TR, MIlazzo JP, Roberts RJ (November 1978). "A computer assisted method for the determination of restriction enzyme recognifion sites". Nucleic Acids Res. 5 (11): 4105–27. doi:10.1093/nar/5.11.4105. PMC 342737. PMID 724510.
  39. ^ Hattman S, Keister T, Gottehrer A (October 1978). "Sequence specificity of DNA methylases from Bacillus amyloliquefaciens and Bacillus brevis". J Mol Biol. 124 (4): 701–11. doi:10.1016/0022-2836(78)90178-X. PMID 712853.
  40. ^ Matvienko NI, Pachkunov DM, Kramarov VM (1984). "The recognition sequence of site-specific endonuclease BbvII from Bacillus brevis 80". FEBS Lett. 177: 23–36. doi:10.1016/0014-5793(84)80973-4.
  41. ^ Repin VE, Rechkunova NI, Degtyarev SK, Hachaturyan AA, Afrikyan EK (1989). "Aerobic spore-forming bacteria as producers of restriction endonucleases". Biol J Armenia. 42: 969–72.
  42. ^ Heiter DF, Lunnen KD, Wilson GG (May 2005). "Site-specific DNA-nicking mutants of the heterodimeric restriction endonuclease R.BbvCI". J Mol Biol. 348 (3): 631–40. doi:10.1016/j.jmb.2005.02.034. PMID 15826660.
  43. ^ Matvienko NN; Kramarov VM; Ivanov LYu; Matvienko NI (April 1992). "Bce83I, a restriction endonuclease from Bacillus cereus 83 which recognizes novel nonpalindromic sequence 5'-CTTGAG-3' and is stimulated by S-adenosylmethionine". Nucleic Acids Res. 20 (7): 1803. doi:10.1093/nar/20.7.1803. PMC 312275. PMID 1315959.
  44. ^ Venetianer P, Orosz A (April 1988). "BcefI, a new type IIS restriction endonuclease". Nucleic Acids Res. 16 (7): 3053–60. doi:10.1093/nar/16.7.3053. PMC 336451. PMID 2835751.
  45. ^ Kong H, Roemer SE, Waite-Rees PA, Benner JS, Wilson GG, Nwankwo DO (January 1994). "Characterization of BcgI, a new kind of restriction-modification system". J Biol Chem. 269 (1): 683–90. doi:10.1016/S0021-9258(17)42403-3. PMID 8276869.
  46. ^ Kong H, Morgan RD, Maunus RE, Schildkraut I (February 1993). "A unique restriction endonuclease, BcgI, from Bacillus coagulans". Nucleic Acids Res. 21 (4): 987–91. doi:10.1093/nar/21.4.987. PMC 309233. PMID 8451198.
  47. ^ Roberts RJ, Macelis D (January 1997). "REBASE-restriction enzymes and methylases". Nucleic Acids Res. 25 (1): 248–62. doi:10.1093/nar/25.1.248. PMC 146408. PMID 9016548.
  48. ^ Rowland GC, Lim PP, Glass RE (July 1992). "'Stop-codon-specific' restriction endonucleases: their use in mapping and gene manipulation". Gene. 116 (1): 21–6. doi:10.1016/0378-1119(92)90624-X. PMID 1628840.
  49. ^ Bingham AH, Atkinson T, Sciaky D, Roberts RJ (October 1978). "A specific endonuclease from Bacillus caldolyticus". Nucleic Acids Res. 5 (10): 3457–67. doi:10.1093/nar/5.10.3457. PMC 342687. PMID 724493.
  50. ^ Janulaitis A, Klimasauskas S, Petrusyte M, Butkus V (September 1983). "Cytosine modification in DNA by BcnI methylase yields N4-methylcytosine". FEBS Lett. 161 (1): 131–4. doi:10.1016/0014-5793(83)80745-5. PMID 6884523.
  51. ^ Janulaitis AA, Petrusite MA, Jaskelavicene BP, Krayev AS, Skryabin KG, Bayev AA (January 1982). "A new restriction endonuclease BcnI from Bacillus centrosporus RFL 1". FEBS Lett. 137 (2): 178–80. doi:10.1016/0014-5793(82)80343-8. PMID 6277689.
  52. ^ Sokolowska M, Kaus-Drobek M, Czapinska H, Tamulaitis G, Szczepanowski RH, Urbanke C, Siksnys V, Bochtler M (June 2007). "Monomeric restriction endonuclease BcnI in the apo form and in an asymmetric complex with target DNA". J Mol Biol. 369 (3): 722–34. doi:10.1016/j.jmb.2007.03.018. PMID 17445830.
  53. ^ Leung SM, Kam KM, Chan KY, Shaw PC (1990). "Purification and characterization of restriction endonuclease BcoI from a soil isolate of Bacillus coagulans". FEMS Microbiol Lett. 66 (2): 153–6. doi:10.1111/j.1574-6968.1990.tb03988.x. PMID 1936944.

Retrieved from ""